View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16235_low_7 (Length: 467)
Name: NF16235_low_7
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_7 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Original strand, 905141 - 905582
Alignment:
| Q |
16 |
caatgaattcattgtcacattcctcattccaacacttggtcctctcactccttcaatggaacaagtcttgaacactcttccaccaaacatagaattcatt |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
905141 |
caatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaacactcttcccccaaacatagaattcatt |
905240 |
T |
|
| Q |
116 |
gttcttcctcaagtaaaacaccttccagagattaatcttgaacctgcaacacaaatgaaactcattgtgaaacattctattccatttctacaagaagaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
905241 |
gttcttcctcaagtaaaacaccttccagagattaatcttgaacctgcaacacaaatgaaactcattgtgaaacattctattccatttctacaagaagaag |
905340 |
T |
|
| Q |
216 |
taaaatcactcatttccaaaactaaccttgtttctttaatctttggtctattctcaaccgatgcacatgaagttgctaaacaattcaatttatcttctta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
905341 |
taaaatcactcatttccaaaactaaccttgtttctttaatctttggtctattctcaaccgatgcacatgaagttgctaaacaattcaatttatcttctta |
905440 |
T |
|
| Q |
316 |
ccttttctatgcctcgggtgccctttcattgtcattctttctcactcttccgaatctcgacgactctgtttcctctgaagcagaattcttagaatcagct |
415 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
905441 |
ccttttctatgcctcgggtgctctttcattgtcattctttctcactcttccgaatctcgacgactctgtttcctctgaagcagaattcttagaatcagct |
905540 |
T |
|
| Q |
416 |
tatgaaactgtgaatattccaggttgtgtcatcccatttcat |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
905541 |
tatgaaactgtgaatattccaggttgtgtcatcccatttcat |
905582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 439
Target Start/End: Complemental strand, 895499 - 895079
Alignment:
| Q |
16 |
caatgaattcattgtcacattcctcattccaacacttggtcctctcactccttcaatggaacaagtcttgaacactcttccaccaaacatagaattcatt |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| ||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
895499 |
caatgaattcattgtcacattcatcattccaacactttctcctcttactccttcaatgcaacaagtcttgaacaatcttccaccaaacatagacttcatt |
895400 |
T |
|
| Q |
116 |
gttcttcctcaagtaaaacaccttccagagattaatcttgaacctgcaacacaaatgaaactcattgtgaaacattctattccatttctacaagaagaag |
215 |
Q |
| |
|
||||||||||||||||| | ||| | | | || || |||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
895399 |
cttcttcctcaagtaaaaaatattcaacaaagccat---gatcctgcagcacaaatgaaactcattgtgaaacattctattccatttcttcaacaagaag |
895303 |
T |
|
| Q |
216 |
taaaatcactcatttccaaaactaaccttgtttctttaatctttggtctattctcaaccgatgcacatgaagttgctaaacaattcaatttatcttctta |
315 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||| |||||||||| |||||||| || || |||||||| |
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|
| T |
895302 |
ttaaatcactcatttccaaaactaaccttgtttctttaatcttcagtatattttcaacagatgcatatgaagttgccaaacaatttaacttgtcttctta |
895203 |
T |
|
| Q |
316 |
ccttttctatgcctcgggtgccctttcattgtcattctttctcactcttccgaatctcgacgactctgtttcctctgaagcagaattcttagaatcagct |
415 |
Q |
| |
|
||||||||||||||| || || || || ||||| | ||||||||||| |||||||||||||||| ||||||| ||| ||| |||||||| |||||| |
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|
| T |
895202 |
ccttttctatgcctcaggagctgttccaacatcattttatctcactcttctgaatctcgacgactctatttcctcggaaatagagttcttagagtcagct |
895103 |
T |
|
| Q |
416 |
tatgaaactgtgaatattccaggt |
439 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
895102 |
tatgaaactgtgaatgttccaggt |
895079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 30 - 375
Target Start/End: Original strand, 439 - 787
Alignment:
| Q |
30 |
tcacattcctcattccaacacttggtcctctcactccttcaatggaacaagtcttgaacactcttccaccaaacatagaattcattgttcttcctcaagt |
129 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||| ||| || | |||||||||| |||||||||||||| | |||| ||||||||| ||||| |
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|
| T |
439 |
tcacattcctcattcccacacttggtccactaactccttccatgcaatcaatcttgaacacacttccaccaaacatgaacttcactgttcttccccaagt |
538 |
T |
|
| Q |
130 |
aaa------acaccttccagagattaatcttgaacctgcaacacaaatgaaactcattgtgaaacattctattccatttctacaagaagaagtaaaatca |
223 |
Q |
| |
|
|| | |||||||| | ||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||| |
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|
| T |
539 |
caacattgaagaccttccaca---taatcttgaaccttcaacacaaatgaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatca |
635 |
T |
|
| Q |
224 |
ctcatttccaaaactaaccttgtttctttaatctttggtctattctcaaccgatgcacatgaagttgctaaacaattcaatttatcttcttaccttttct |
323 |
Q |
| |
|
|| |||| ||||||||||||||| ||||| | | | | || |||||||||||||| || || |||||||| ||||| | | ||||||||||||| |
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|
| T |
636 |
cttctttcaaaaactaaccttgttgctttagtttgcagcatgttttcaaccgatgcacacgatgtagctaaacatttcaaccttttgtcttaccttttct |
735 |
T |
|
| Q |
324 |
atgcctcgggtgccctttcattgtcattctttctcactcttccgaatctcga |
375 |
Q |
| |
|
| | || || || ||| ||| || ||||||||||||||||| || ||||| |
|
|
| T |
736 |
tttcttcaggagctgttttattctctttctttctcactcttccaaacctcga |
787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 7e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 30 - 375
Target Start/End: Original strand, 33256321 - 33256669
Alignment:
| Q |
30 |
tcacattcctcattccaacacttggtcctctcactccttcaatggaacaagtcttgaacactcttccaccaaacatagaattcattgttcttcctcaagt |
129 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||| ||| || | |||||||||| |||||||||||||| | |||| ||||||||| ||||| |
|
|
| T |
33256321 |
tcacattcctcattcccacacttggtccactaactccttccatgcaatcaatcttgaacacacttccaccaaacatgaacttcactgttcttccccaagt |
33256420 |
T |
|
| Q |
130 |
aaa------acaccttccagagattaatcttgaacctgcaacacaaatgaaactcattgtgaaacattctattccatttctacaagaagaagtaaaatca |
223 |
Q |
| |
|
|| | |||||||| | ||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
33256421 |
caacattgaagaccttccaca---taatcttgaaccttcaacacaaatgaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatca |
33256517 |
T |
|
| Q |
224 |
ctcatttccaaaactaaccttgtttctttaatctttggtctattctcaaccgatgcacatgaagttgctaaacaattcaatttatcttcttaccttttct |
323 |
Q |
| |
|
|| |||| ||||||||||||||| ||||| | | | | || |||||||||||||| || || |||||||| ||||| | | ||||||||||||| |
|
|
| T |
33256518 |
cttctttcaaaaactaaccttgttgctttagtttgcagcatgttttcaaccgatgcacacgatgtagctaaacatttcaaccttttgtcttaccttttct |
33256617 |
T |
|
| Q |
324 |
atgcctcgggtgccctttcattgtcattctttctcactcttccgaatctcga |
375 |
Q |
| |
|
| | || || || ||| ||| || ||||||||||||||||| || ||||| |
|
|
| T |
33256618 |
tttcttcaggagctgttttattctctttctttctcactcttccaaacctcga |
33256669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 30 - 303
Target Start/End: Complemental strand, 8295434 - 8295158
Alignment:
| Q |
30 |
tcacattcctcattccaacacttggtcctctcactccttcaatggaacaagtcttgaacactcttccaccaaacatagaattcattgttcttcctcaagt |
129 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||| ||| || ||||||||||||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
8295434 |
tcacattcctcattcccacacttggtccactaactccttccatgcaatccatcttgaacactcttccaccaaacatgaacttcattgttcttccccaagt |
8295335 |
T |
|
| Q |
130 |
aaa------acaccttccagagattaatcttgaacctgcaacacaaatgaaactcattgtgaaacattctattccatttctacaagaagaagtaaaatca |
223 |
Q |
| |
|
|| | |||||||| | ||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
8295334 |
caacattgaagaccttccaca---taatcttgatcctgcaacacagatgaaactcatagtgaaacactctattccatttctttatgaagaagtaaaatca |
8295238 |
T |
|
| Q |
224 |
ctcatttccaaaactaaccttgtttctttaatctttggtctattctcaaccgatgcacatgaagttgctaaacaattcaa |
303 |
Q |
| |
|
||| |||| |||||| ||| ||| ||||| | || | | || ||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
8295237 |
ctcctttcaaaaactcgcctagttgctttagttttcagcatgttttcaaccgatgcacatgatgttgcgaaacatttcaa |
8295158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 6440494 - 6440569
Alignment:
| Q |
16 |
caatgaattcattgtcacattcctcattccaacacttggtcctctcactccttcaatggaacaagtcttgaacact |
91 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| |||||| |||||||||||||||| | ||||| ||||||||| |
|
|
| T |
6440494 |
caatgagttcattgtcacattcctcgttccaacatttggtcgtctcactccttcaatgtagcaagtattgaacact |
6440569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 34765315 - 34765258
Alignment:
| Q |
16 |
caatgaattcattgtcacattcctcattccaacacttggtcctctcactccttcaatg |
73 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||| ||||||||||| ||||||| |
|
|
| T |
34765315 |
caatgagttcattgtcacattcctcgttccaacacttgatcctctcactctttcaatg |
34765258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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