View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16235_low_9 (Length: 459)
Name: NF16235_low_9
Description: NF16235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16235_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 37940049 - 37940324
Alignment:
| Q |
1 |
aacaatgtgtctgcaattgcatcagatcctaagtttaggcttgctgttgcagctgcaatttcatcactcatgaataaagaaagcaacaacactactactc |
100 |
Q |
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| T |
37940049 |
aacaatgtgtctgcaattgcatcagatcctaagtttaggcttgctgttgcagctgcaatttcatcactcatgaataaagaaagcaacaacaccactactc |
37940148 |
T |
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| Q |
101 |
atggtagcaacaattgagtcattgatcatcaatctctttttgggaatgctaagcccaatatatgannnnnnnnnncactacaaagaagttaataatagta |
200 |
Q |
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| T |
37940149 |
atggtagcaacaattgagtcattgatcatcaatctctttttgggaatggtaagcccactatatgattttttttttcgctacaaagaagttaataatagta |
37940248 |
T |
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| Q |
201 |
ataataagtttgttttgaagacaaacaaagaagaaagtgaatgttattatgtagcaatatattacaatagtggtta |
276 |
Q |
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| T |
37940249 |
ataataagtttgttttgaagacaaacaaagaagaaagtgaatgttattatgtagcaatatattacaatagtggtta |
37940324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 275 - 423
Target Start/End: Original strand, 37940395 - 37940542
Alignment:
| Q |
275 |
tactagcaaattttgtttcacttgtaatctggcttttcttgtttactgttgtgaagagaaggtttgtgtcattagctgaattagatacaaagaatttata |
374 |
Q |
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| T |
37940395 |
tactagcaaattctgtttcacttgtaatctggcttttcttgtttactgttgtgaagagaag-tttgtgtcattagctgaattagatacaaaggatttata |
37940493 |
T |
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| Q |
375 |
acgtattacttatttaagtatatattagaaatcctttcttatctggttt |
423 |
Q |
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| T |
37940494 |
acatattacttatttaagtatatattagaaagcctttcttatctggttt |
37940542 |
T |
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