View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16236_high_2 (Length: 385)
Name: NF16236_high_2
Description: NF16236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16236_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 66 - 332
Target Start/End: Complemental strand, 51265858 - 51265594
Alignment:
| Q |
66 |
aaggattatgttgacatgaatgttattgttaaatatatacaagtgcatgaagttgcaaagaagatatggactggaaaggtgggtgaacatgagaaagaaa |
165 |
Q |
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| T |
51265858 |
aaggattatgttgacatcaatgttattgttaaatata--caggtgcatgaagttgcaaagaagatatggactggaaaggtgggtgaacatgagaaagaaa |
51265761 |
T |
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| Q |
166 |
aggaggagttaataaaaaatttgaagacattggaagaggttcttggtgacaagacatatttagcgggagacacatttggttttcctgatattgctttaat |
265 |
Q |
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| T |
51265760 |
aggaggagttaataaaaaatttgaagacattggaagaggttcttggtgacaagccatatttagcgggagacacatttggttttcctgatattgctttaat |
51265661 |
T |
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| Q |
266 |
tccattttatagatggttttctacttatgaggcagtagggaaaatgaagttagactgcccaaaactt |
332 |
Q |
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| T |
51265660 |
tccattttatagatggttttctacttatgagacagtagggaaaatgaagttagactgcccaaaactt |
51265594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 51265434 - 51265390
Alignment:
| Q |
324 |
ccaaaacttattgcatggggaaagagatgtttagagagagaaagc |
368 |
Q |
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| T |
51265434 |
ccaaaacttattgcatggggaaagagatgtttagagagagaaagc |
51265390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 51265963 - 51265921
Alignment:
| Q |
17 |
ttagatggtcaaaatgtgtatagcttgaattcaatcacacata |
59 |
Q |
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| T |
51265963 |
ttagatggtcaaaatgtgtatagcttgaattcaatcacacata |
51265921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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