View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16236_high_4 (Length: 278)
Name: NF16236_high_4
Description: NF16236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16236_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 45230220 - 45229978
Alignment:
| Q |
20 |
gagagtagtgtttcctcagcgtcactcggattctgatgagggcaaggtatgcaaaaatatacatgaaagtggttttaatgcctcatttgtttatgttact |
119 |
Q |
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| T |
45230220 |
gagagtagtgtttcctcagcgtcactcggattctgatgagggcaaggtatgcaaaaatatacatgaaagtggttttaatgcctcatttgtttatgttact |
45230121 |
T |
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| Q |
120 |
taatgattatttcatgttgcagttgaatgtggaatatcatttcccatctaatccgaaatactttgacatcagcagctaaaatgtcaatgcatctctgtca |
219 |
Q |
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| T |
45230120 |
taatgattatttcatgttgcagttgaatgtggaatatcatttcccatctaatccgaaatactttgacatcagcagctaaaatgtcaatgcatctctgtca |
45230021 |
T |
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| Q |
220 |
atggttttgtacatataattgtaaatattgtatgtatacaatt |
262 |
Q |
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| T |
45230020 |
atggttttgtacatataattgtaaatattgtatgcatacaatt |
45229978 |
T |
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