View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16236_low_1 (Length: 407)
Name: NF16236_low_1
Description: NF16236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16236_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 53229426 - 53229787
Alignment:
| Q |
18 |
agtttttgtaggaaatttttaggaaaagtgtgaaatattgaatgatcaattctcattaatatgttacatctacagttatatttggtggttgatatttatt |
117 |
Q |
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| T |
53229426 |
agtttttgtaggaaatttttaggaaaagtgtgaaatattgaatgatcaattctcattaatatgttacatctacagttatatttggtggttgatatt---- |
53229521 |
T |
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| Q |
118 |
tatttttctctctatgaagtgatcctcctcctctactttttctgttttcattattcttaaaagaacataaaatttcgtttgttatatagttttaattgtc |
217 |
Q |
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| T |
53229522 |
tatttttctctctatgaagtgatcctcctcctctactttttctgttttcattattcttaaaagaaaataaaatttcgtttgttatatagttttaattgtc |
53229621 |
T |
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| Q |
218 |
tcggcagttatatagtgtaaattgtctctccatgtaaatgaaatgaactcgggtcaatatatagacataacttgaagtttgttgtatttttcaggtccaa |
317 |
Q |
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| T |
53229622 |
tcggcagttatatagtgtaaattgtctctccatgtaaatgaaatgaactcgggtcaatatatagacataacttgaagtttgttgtatttttcaggtccaa |
53229721 |
T |
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| Q |
318 |
gctgtgtataatgctatgaggaggggtgacatgcaccgtttccaatcgataaattcatattcctgg |
383 |
Q |
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| T |
53229722 |
gctgtgtataatgctatgaggaggggtgacatgcaccgtttccaatcgataaattgatattcctgg |
53229787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 38536752 - 38536679
Alignment:
| Q |
37 |
taggaaaagtgtgaaatattgaatgatcaattctcattaatatgttacatctacagttatatttggtggttgat |
110 |
Q |
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| T |
38536752 |
taggaaaagtgtgaaatattacatgaacagttctcattaatatgttacatctacgcgtacatttggtggttgat |
38536679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 348
Target Start/End: Complemental strand, 38536374 - 38536331
Alignment:
| Q |
305 |
ttttcaggtccaagctgtgtataatgctatgaggaggggtgaca |
348 |
Q |
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| T |
38536374 |
ttttcaggtccaagctgtatataatgctatgaggagggatgaca |
38536331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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