View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16236_low_4 (Length: 294)

Name: NF16236_low_4
Description: NF16236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16236_low_4
NF16236_low_4
[»] chr7 (1 HSPs)
chr7 (10-294)||(978850-979137)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 294
Target Start/End: Original strand, 978850 - 979137
Alignment:
Q  10 agagagaagaatatagagaaagatgaaatctagaagaaaccaag---gtttatgtagggtaacagacaaaagcacatagaaaaagaaaaggtgaatacgc 106  Q
    ||||||||||||||||||||| ||||||||||||||||||||||   |||| |||||||||||||||||||||||| |||||||||||||||||||||      
T  978850 agagagaagaatatagagaaaaatgaaatctagaagaaaccaagaaggtttctgtagggtaacagacaaaagcacagagaaaaagaaaaggtgaatacat 978949  T
Q  107 tctgataaagaaatcaataattcttgtagagtacaactgaaagaaagaaacacatataacaacccaggagataaaagattctagcaccagggggacccaa 206  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  978950 tatgataaagaaatcaataattcttgtagagtacaactgaaagaaagagacacatataagaacccaggagataaaagattctagcaccaggtggacccaa 979049  T
Q  207 acaaaagcaaaggaaaaacctcagaaatcaagaagaggggattaatcttgggtcaaggtgaagaaaaggcaaaaaggaaagccaaaga 294  Q
    ||| ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  979050 acagaagcaaaggaaaaacctcaaaaatcaagaagagaagattaatcttgggtcaaggtgaagaaaaggcaaaaaggaaagccaaaga 979137  T

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