View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16237_high_1 (Length: 648)
Name: NF16237_high_1
Description: NF16237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16237_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 586; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Complemental strand, 23306487 - 23305858
Alignment:
| Q |
1 |
cagagatccgaggaatcacattcaaccgaactcaaatcaaaattagaatgatcagaacctaaaacttaaccaacaaagcctacatcaaactcacagatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23306487 |
cagagatccgaggaatcacattcaaccgaactcaaatcaaaattagaatgatcagaacctaaaacttaaccaacaaagcctacatcaaactcacagatga |
23306388 |
T |
|
| Q |
101 |
gagacaaacacaaaaaatttcaagcttgtgacgtctggtgttacaatttagcataggagacctaaaatcagtgtgcagcgtgtccgatggctaagatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23306387 |
gagacaaacacaaaaaatttcaagcttgtgacatgtggtgttacaatttggcataggagacctaaaatcagtgtgcagcgtgttcgatggctaagatttc |
23306288 |
T |
|
| Q |
201 |
agagtatgtgtggtggttgaaattgacgtgtgggtggttaaaattcatgtgtgcagcagttcaagtcggcaagagccgtggtttgagcaagtaatcaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23306287 |
agagtatgtgtggtggttgaaattgacgtgtgggtggttaaaattcatgtgtgcagcagttcaagtcggcaagagccgtggtttgagcaagtaatcaaat |
23306188 |
T |
|
| Q |
301 |
cggagggtcacagttagaggagcttttttcggtaactggttttgtatatttgaaagagcgttttagtttgaagagttatacctagtcgataaaggttgat |
400 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23306187 |
cggagggtcacagttagaggagcttgtttcggtaactggttgtgtatatttgaaagagcgttttagtttgaagagttatacctagtcgataaaggttgat |
23306088 |
T |
|
| Q |
401 |
tctatacccatctcagttggcttaacggtgtgcttgagtagttgaagtatgcttctctcaagatctcaaatttgattccacacgtgctaatttc-ggatt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || |
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| T |
23306087 |
tctatacccatctcagttggcttaacggtgtgcttgagtagttgaagtatgcttctctcaagatctcaaattcgattccacacgtgctaatttcgggttt |
23305988 |
T |
|
| Q |
500 |
ggttagtccatgctttaaatgaggcctcgcaagtggacaaagagattcaaccatgagattagtcggtgggccggataccaagtttataaaagaaaatcga |
599 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23305987 |
ggttagtccatgctttaaatggggcctcgcaagtggacaaagagattcaaccatgagattagtcggtgggccggataccaagtttataaaagaaaatcga |
23305888 |
T |
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| Q |
600 |
ttgcatgcgaatgtcattatccatgtagaa |
629 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23305887 |
ttgcatgcgaatgtcattatccatgtagaa |
23305858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 23553700 - 23553615
Alignment:
| Q |
167 |
atcagtgtgcagcgtgtccgatggctaagatttcagagtatgtgtggtggttgaaattgacgtgtg-ggtggttaaaattcatgtgtg |
253 |
Q |
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||||| ||||||||||| |||||| ||||||||||||| | ||| ||||||||||| |||||| |||||||||||| |||||||| |
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| T |
23553700 |
atcagcgtgcagcgtgtgcgatggttaagatttcagag--tttgtcgtggttgaaatctccgtgtgcggtggttaaaatccatgtgtg |
23553615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 478
Target Start/End: Complemental strand, 22693211 - 22693175
Alignment:
| Q |
442 |
ttgaagtatgcttctctcaagatctcaaatttgattc |
478 |
Q |
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||||||| ||||||||||||||||||| ||||||||| |
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| T |
22693211 |
ttgaagtgtgcttctctcaagatctcatatttgattc |
22693175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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