View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16237_high_17 (Length: 204)

Name: NF16237_high_17
Description: NF16237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16237_high_17
NF16237_high_17
[»] chr2 (14 HSPs)
chr2 (4-131)||(32599247-32599374)
chr2 (2-130)||(17823633-17823761)
chr2 (1-130)||(13696965-13697094)
chr2 (1-130)||(36272661-36272790)
chr2 (1-132)||(33555360-33555492)
chr2 (1-132)||(36709190-36709320)
chr2 (47-131)||(14242523-14242607)
chr2 (2-132)||(40095317-40095446)
chr2 (2-130)||(42061237-42061359)
chr2 (50-130)||(4434592-4434672)
chr2 (94-130)||(23860198-23860234)
chr2 (55-136)||(31220668-31220750)
chr2 (58-131)||(40216518-40216592)
chr2 (64-132)||(14945734-14945803)
[»] chr5 (9 HSPs)
chr5 (1-131)||(13988300-13988430)
chr5 (1-131)||(36890430-36890559)
chr5 (1-132)||(11247245-11247376)
chr5 (47-132)||(20151473-20151558)
chr5 (58-132)||(12248382-12248457)
chr5 (58-131)||(8076364-8076438)
chr5 (55-130)||(1447748-1447822)
chr5 (64-132)||(15285434-15285503)
chr5 (58-130)||(43100208-43100281)
[»] chr4 (21 HSPs)
chr4 (1-130)||(25164471-25164600)
chr4 (1-130)||(37605691-37605820)
chr4 (1-130)||(45995895-45996023)
chr4 (1-131)||(55281261-55281391)
chr4 (1-131)||(17044056-17044185)
chr4 (4-131)||(43749148-43749277)
chr4 (47-132)||(39631008-39631093)
chr4 (55-130)||(3287186-3287262)
chr4 (47-133)||(51579679-51579765)
chr4 (71-132)||(5208425-5208486)
chr4 (55-132)||(24059133-24059210)
chr4 (131-204)||(33250447-33250520)
chr4 (58-131)||(40947103-40947176)
chr4 (82-131)||(51293081-51293130)
chr4 (55-118)||(32525034-32525097)
chr4 (1-130)||(5817380-5817509)
chr4 (58-132)||(14149958-14150033)
chr4 (58-130)||(48525435-48525508)
chr4 (47-101)||(37432585-37432639)
chr4 (61-133)||(14786733-14786806)
chr4 (68-132)||(22364469-22364534)
[»] chr7 (11 HSPs)
chr7 (4-135)||(30922705-30922836)
chr7 (1-132)||(46576240-46576371)
chr7 (4-131)||(33496555-33496682)
chr7 (55-129)||(52044-52118)
chr7 (55-126)||(48460759-48460830)
chr7 (47-130)||(38754897-38754980)
chr7 (58-132)||(13768478-13768554)
chr7 (58-131)||(28713786-28713860)
chr7 (58-134)||(38349455-38349532)
chr7 (50-132)||(47480012-47480095)
chr7 (64-132)||(31741148-31741217)
[»] chr1 (17 HSPs)
chr1 (1-132)||(1995006-1995136)
chr1 (1-132)||(2402923-2403054)
chr1 (1-132)||(32267463-32267594)
chr1 (1-131)||(27325626-27325757)
chr1 (1-132)||(44797465-44797595)
chr1 (1-129)||(29637211-29637339)
chr1 (49-131)||(40030887-40030969)
chr1 (55-131)||(15066019-15066096)
chr1 (1-122)||(1673422-1673543)
chr1 (58-132)||(19989346-19989420)
chr1 (58-131)||(47571562-47571636)
chr1 (64-132)||(526907-526976)
chr1 (64-132)||(39858452-39858521)
chr1 (64-131)||(13276473-13276541)
chr1 (58-129)||(29731297-29731369)
chr1 (64-130)||(46845666-46845733)
chr1 (64-131)||(40314197-40314265)
[»] chr6 (8 HSPs)
chr6 (1-131)||(9045886-9046015)
chr6 (4-130)||(34792651-34792777)
chr6 (1-132)||(1244554-1244685)
chr6 (1-132)||(14313985-14314115)
chr6 (55-132)||(9521810-9521887)
chr6 (58-130)||(16718106-16718179)
chr6 (58-133)||(12748321-12748397)
chr6 (64-134)||(23916077-23916148)
[»] chr8 (11 HSPs)
chr8 (47-132)||(4076767-4076852)
chr8 (48-131)||(14342186-14342269)
chr8 (1-132)||(43065903-43066033)
chr8 (1-131)||(1993638-1993769)
chr8 (58-130)||(11904962-11905035)
chr8 (50-130)||(5749029-5749109)
chr8 (58-133)||(35200665-35200741)
chr8 (57-128)||(16465610-16465681)
chr8 (64-130)||(28898100-28898167)
chr8 (57-132)||(8368370-8368445)
chr8 (58-135)||(31774836-31774913)
[»] chr3 (11 HSPs)
chr3 (1-130)||(38247851-38247979)
chr3 (2-130)||(48034808-48034937)
chr3 (4-132)||(9271166-9271296)
chr3 (1-128)||(12224006-12224132)
chr3 (1-130)||(50989256-50989385)
chr3 (1-130)||(51092388-51092517)
chr3 (55-128)||(8496814-8496887)
chr3 (55-132)||(54713631-54713708)
chr3 (58-130)||(36674519-36674592)
chr3 (60-131)||(46135636-46135708)
chr3 (64-131)||(23004870-23004938)
[»] scaffold0933 (1 HSPs)
scaffold0933 (55-132)||(3054-3131)
[»] scaffold0533 (1 HSPs)
scaffold0533 (4-130)||(10232-10357)
[»] scaffold0005 (1 HSPs)
scaffold0005 (61-133)||(52924-52997)


Alignment Details
Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 32599374 - 32599247
Alignment:
Q  4 aattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatgga 103  Q
    ||||||||||||||| ||||||||||||||||||||       ||||||| |||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  32599374 aattttgacaagtgtccttgtggtccctccacacacaaaaaaactcacatgtattgtctgtcacacactctcacatggagtggtacaatgtgtgtatgga 32599275  T
Q  104 aaaaagtgtgtacatgaaacattatcct 131  Q
    ||||||||||||||||||||||||||||    
T  32599274 aaaaagtgtgtacatgaaacattatcct 32599247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 17823633 - 17823761
Alignment:
Q  2 acaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatg 101  Q
    |||||||||| |||||| ||||||||||| ||||||||       ||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  17823633 acaattttgataagtgtccttgtggtccccccacacacaaaaaaactcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatg 17823732  T
Q  102 gaaaaaagtgtgtacatgaaacattatcc 130  Q
    |||||||||||||||||||||||||||||    
T  17823733 gaaaaaagtgtgtacatgaaacattatcc 17823761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 13697094 - 13696965
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||| |||||||| || ||||||||        |||||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  13697094 cacaattttgacaagtgtccttgtggttcccccacacacaaaaaaagtcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtat 13696995  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcc 130  Q
    ||||||||||||||||||||||||||||||    
T  13696994 ggaaaaaagtgtgtacatgaaacattatcc 13696965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 36272790 - 36272661
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||| |||||||||||  |||||||       ||||||| |||||||| ||||||||||||| ||||||||||||||| ||| |||    
T  36272790 cacaattttgacaagtgtccttgtggtccccacacacacaaaaaaactcacatgtattgtctttcacacactctcacatggagtggtacaatgtgtatat 36272691  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcc 130  Q
    ||||||||||||||||||||||||||||||    
T  36272690 ggaaaaaagtgtgtacatgaaacattatcc 36272661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 33555492 - 33555360
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnn-ctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgta 99  Q
    ||||||||||||||||||  |||||||||| |||||||         ||||||| |||||||| ||||||| ||||| ||||||||||||||| ||||||    
T  33555492 cacaattttgacaagtgtcattgtggtccccccacacaaaaaaaaaactcacatgtattgtctgtcacacattctcacatggagtggtacaatgtgtgta 33555393  T
Q  100 tggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    |||||||||||||||||||||||||||||||||    
T  33555392 tggaaaaaagtgtgtacatgaaacattatcctt 33555360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 36709320 - 36709190
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||| |||  |||||||||| ||||||||       ||||||| |||||||| ||||||| ||||||||||||||||||||| | |||||    
T  36709320 cacaattttgacaaatgtcattgtggtccccccacacacaaaaaa-ctcacatgtattgtctgtcacacattctcatatggagtggtacaatgtttgtat 36709222  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    |||||||| |||||||||||||||||||||||    
T  36709221 ggaaaaaaatgtgtacatgaaacattatcctt 36709190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 14242607 - 14242523
Alignment:
Q  47 ctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcct 131  Q
    ||||||| ||||| |||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14242607 ctcacatgtattgcctctcagacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 14242523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 40095317 - 40095446
Alignment:
Q  2 acaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatg 101  Q
    |||||||||||||||||  |||||||||| ||||||||       || |||| |||||||||||||||||||||  || |||||||||| | | ||||||    
T  40095317 acaattttgacaagtgtcattgtggtccccccacacacaaaaaaacttacatgtattgtctctcacacactctcgcatagagtggtacagtgtatgtatg 40095416  T
Q  102 gaaaaaagtgtgtacatgaaacattatcctt 132  Q
    ||||||| |||||||||||||||||||||||    
T  40095417 gaaaaaa-tgtgtacatgaaacattatcctt 40095446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 42061359 - 42061237
Alignment:
Q  2 acaattttgacaagtgttcttgtggtccctccacacacnnnnnnn-ctcacatatattgtctctc--acacactctcatatggagtggtacaatatgtgt 98  Q
    ||||||||||||||||| ||||||||||| ||||||||        ||||||| |||||||||||  ||||||||||||||||||||||         ||    
T  42061359 acaattttgacaagtgtccttgtggtccccccacacacacaaaaaactcacatgtattgtctctctcacacactctcatatggagtggt---------gt 42061269  T
Q  99 atggaaaaaagtgtgtacatgaaacattatcc 130  Q
    ||||||||||||||||||||||||||||||||    
T  42061268 atggaaaaaagtgtgtacatgaaacattatcc 42061237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 4434672 - 4434592
Alignment:
Q  50 acatatattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcc 130  Q
    |||| |||||||||||||||| ||||| |||  |||||||||| |||||||||||||||  |||| |||||||||||||||    
T  4434672 acatttattgtctctcacacattctcacatgaggtggtacaatgtgtgtatggaaaaaatagtgttcatgaaacattatcc 4434592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 23860234 - 23860198
Alignment:
Q  94 tgtgtatggaaaaaagtgtgtacatgaaacattatcc 130  Q
    |||||||||||||||||||||||||||||||||||||    
T  23860234 tgtgtatggaaaaaagtgtgtacatgaaacattatcc 23860198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 31220668 - 31220750
Alignment:
Q  55 tattgtctctcacacactctcatatggagtggtacaatatgtgtatgg--aaaaaagtgtgtacatgaaacattatccttatta 136  Q
    ||||||| | ||||||||||||||||| | |||||||| |||||||||  | ||||| |||| |||||||||||||||||||||    
T  31220668 tattgtcacccacacactctcatatgggg-ggtacaatttgtgtatggcgagaaaagggtgtccatgaaacattatccttatta 31220750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 40216518 - 40216592
Alignment:
Q  58 tgtctctcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcct 131  Q
    ||||||||| ||||||||| ||||| |||||||||| ||||||| ||  |||| |||| ||||||||||||||||    
T  40216518 tgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcct 40216592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 14945803 - 14945734
Alignment:
Q  64 tcacacactctcatat-ggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    |||| |||||||| || |||||||||||  ||||||||| | ||||| |||| |||||||||||||||||    
T  14945803 tcacgcactctcacataggagtggtacataatgtgtatgaagaaaagggtgttcatgaaacattatcctt 14945734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 13988300 - 13988430
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||| ||||||||||| ||||||||        |||||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  13988300 cacaattttgacaagtgtccttgtggtccccccacacacaaaaaaagtcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtat 13988399  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcct 131  Q
    |||||||||||||||||||||||||||||||    
T  13988400 ggaaaaaagtgtgtacatgaaacattatcct 13988430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 36890430 - 36890559
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||| ||||||||||| ||||||||       ||||||| |||||||||||| ||||||||| || |||||||||||| |||||||    
T  36890430 cacaattttgacaagtgtccttgtggtccc-ccacacacaaaaaaactcacatgtattgtctctcatacactctcacatcgagtggtacaatgtgtgtat 36890528  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcct 131  Q
    |||||||||||||||||||||||||||||||    
T  36890529 ggaaaaaagtgtgtacatgaaacattatcct 36890559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 11247245 - 11247376
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||| |||  ||||| |||| | ||||||       ||||||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  11247245 cacaattttgacaaatgtctttgtgatccccctacacacaaaaaaactcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtat 11247344  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    ||||||||||||||||||||||||||||||||    
T  11247345 ggaaaaaagtgtgtacatgaaacattatcctt 11247376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 20151473 - 20151558
Alignment:
Q  47 ctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    ||||||| |||||||||||||||||||||| |||| |||||| ||| | |||||||||||||  |||||||||||| |||||||||    
T  20151473 ctcacatttattgtctctcacacactctcacatggggtggtataatgtatgtatggaaaaaaaggtgtacatgaaatattatcctt 20151558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 12248382 - 12248457
Alignment:
Q  58 tgtctctcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    ||||||||| ||||| ||| ||||| |||||||||| ||||||| || ||||| |||| |||||||||||||||||    
T  12248382 tgtctctcaaacactatcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcctt 12248457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 8076364 - 8076438
Alignment:
Q  58 tgtctctcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcct 131  Q
    ||||||||| ||||||||| ||||| |||||||||| | ||||| || ||||| |||| ||||||||||||||||    
T  8076364 tgtctctcaaacactctcacatggaagtggtacaatgtatgtatagagaaaagggtgttcatgaaacattatcct 8076438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 1447822 - 1447748
Alignment:
Q  55 tattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcc 130  Q
    |||||||||||| ||||||||| || |  ||||||||  ||||||| |||||||| |||| |||||||||||||||    
T  1447822 tattgtctctcatacactctcacattggatggtacaacgtgtgtatagaaaaaag-gtgttcatgaaacattatcc 1447748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 15285434 - 15285503
Alignment:
Q  64 tcacacactctcatatgg-agtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    ||||||||||||| |||| |||||||||   |||||||| | ||||| |||| |||||||||||||||||    
T  15285434 tcacacactctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatcctt 15285503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 43100281 - 43100208
Alignment:
Q  58 tgtctctcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcc 130  Q
    ||||||||| ||||| ||| ||| | |||||||||| ||||||| || ||||| |||| |||||||||||||||    
T  43100281 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 43100208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 25164600 - 25164471
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||| |||||||| |||||||||||       ||||||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  25164600 cacaattttgacaagtgtccttgtggttcctccacacacaaaaaaactcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtat 25164501  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcc 130  Q
    | ||||||||||||||||||||||||||||    
T  25164500 gcaaaaaagtgtgtacatgaaacattatcc 25164471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 37605820 - 37605691
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||| ||||||||||| ||||||||        |||||| ||||||| |||||||||||||| ||||||||||||||| |||||||    
T  37605820 cacaattttgacaagtgtccttgtggtccccccacacacaaaaaaagtcacatgtattgtccctcacacactctcacatggagtggtacaatgtgtgtat 37605721  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcc 130  Q
    ||||||||||||||||||||||||||||||    
T  37605720 ggaaaaaagtgtgtacatgaaacattatcc 37605691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 45996023 - 45995895
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||||||||||||| | ||||||||       ||||||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  45996023 cacaattttgacaagtgttcttgtggtctc-ccacacacaaaaaaactcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtat 45995925  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcc 130  Q
    |||||||| |||||||||||||||||||||    
T  45995924 ggaaaaaaatgtgtacatgaaacattatcc 45995895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 55281261 - 55281391
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||| ||||||||||| ||||||||        |||||| |||||||||||||||| ||||| ||||||||||||||| | |||||    
T  55281261 cacaattttgacaagtgtccttgtggtccccccacacacaaaaaaagtcacatgtattgtctctcacacattctcacatggagtggtacaatgtatgtat 55281360  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcct 131  Q
    |||||||||||||||||||||||||||||||    
T  55281361 ggaaaaaagtgtgtacatgaaacattatcct 55281391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 17044056 - 17044185
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||| |||||||| || ||||||||        || ||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  17044056 cacaattttgacaagtgtccttgtggttcc-ccacacacaaaaaaagtcccatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtat 17044154  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcct 131  Q
    |||||||||||||||||||||||||||||||    
T  17044155 ggaaaaaagtgtgtacatgaaacattatcct 17044185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 43749148 - 43749277
Alignment:
Q  4 aattttgacaagtgttcttgtggtccctccacacacnnnnnnn--ctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatg 101  Q
    ||||||||||||||| ||||||||||||||||||||         ||||||||||||||| |||||||||||| | ||||||||||||||||| ||||||    
T  43749148 aattttgacaagtgtccttgtggtccctccacacacacaaaaaagctcacatatattgtccctcacacactcttacatggagtggtacaatatatgtatg 43749247  T
Q  102 gaaaaaagtgtgtacatgaaacattatcct 131  Q
     |||||||||||||||||||||||||||||    
T  43749248 aaaaaaagtgtgtacatgaaacattatcct 43749277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 39631093 - 39631008
Alignment:
Q  47 ctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    ||||||| |||||||||||||||||||||| || |||||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  39631093 ctcacatgtattgtctctcacacactctcacatagagtggtacaatgtgtatatggaaaaaagtatgtacatgaaacattatcctt 39631008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 3287186 - 3287262
Alignment:
Q  55 tattgtctctcacacactctcatatggagtggtacaatatgtgtatgg-aaaaaagtgtgtacatgaaacattatcc 130  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  3287186 tattatctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaaagtgtgtacatgaaacattatcc 3287262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 51579679 - 51579765
Alignment:
Q  47 ctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctta 133  Q
    ||||||| |||||||||| ||||||||||| |||| |||||||||| |||||||| || ||||||| ||||| ||||||||||||||    
T  51579679 ctcacatttattgtctcttacacactctcacatggggtggtacaatgtgtgtatgaaagaaagtgtttacataaaacattatcctta 51579765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 5208425 - 5208486
Alignment:
Q  71 ctctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  5208425 ctctcacatggagtggtacaatatgtgtatgaaaaaaagtgtgtacataaaacattatcctt 5208486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 24059210 - 24059133
Alignment:
Q  55 tattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    |||||||||| ||||||||| | |||| |||||||||| ||||||||||| ||||||||||||| |||||||||||||    
T  24059210 tattgtctcttacacactcttacatggggtggtacaatgtgtgtatggaagaaagtgtgtacataaaacattatcctt 24059133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 33250447 - 33250520
Alignment:
Q  131 ttattacagtaaccctttgttgtgtcatgaaggtaaaaccggatacgnnnnnnntatgggccggcttatattat 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||       ||||| ||||||||||||||    
T  33250447 ttattacagtaaccctttgttgtgtcatgaagttaaaaccggatacgaaaaaaatatggcccggcttatattat 33250520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 40947176 - 40947103
Alignment:
Q  58 tgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcct 131  Q
    ||||||||||||||||||||||| | ||||||||||| | |||| ||||||| |||| ||| ||||||||||||    
T  40947176 tgtctctcacacactctcatatgaaatggtacaatatttatatgaaaaaaagagtgtccataaaacattatcct 40947103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 51293130 - 51293081
Alignment:
Q  82 agtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcct 131  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  51293130 agtggtacaatgtgtgtatgaaaaaaagtgtgtacatgaaacattatcct 51293081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 32525097 - 32525034
Alignment:
Q  55 tattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacat 118  Q
    |||| |||||||||||||||||||||| ||| |||||| |||||||||||||||  ||||||||    
T  32525097 tattatctctcacacactctcatatggggtgatacaatgtgtgtatggaaaaaaaggtgtacat 32525034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 5817509 - 5817380
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    ||||||| ||||| |||| | |||||||||  |||||||       |||| || |||||||||  ||||||| | | |||| |||||||||| |||||||    
T  5817509 cacaattgtgacatgtgtccatgtggtccccacacacaccaaaaaactcatatttattgtctcctacacacttttacatggggtggtacaatgtgtgtat 5817410  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcc 130  Q
    ||| |||||  |||||||||||||||||||    
T  5817409 ggagaaaaggatgtacatgaaacattatcc 5817380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 14150033 - 14149958
Alignment:
Q  58 tgtctctcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    ||||||||| ||||| ||| ||||| |||||||||| ||||||| || ||||| |||| |||||||||||||||||    
T  14150033 tgtctctcaaacactttcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcctt 14149958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 48525435 - 48525508
Alignment:
Q  58 tgtctctcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcc 130  Q
    ||||||||| ||||||||| ||||| |||||||||| ||||||| ||  |||| |||| |||||||||||||||    
T  48525435 tgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcc 48525508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 37432639 - 37432585
Alignment:
Q  47 ctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatg 101  Q
    |||||||  ||| ||||||||||||||||||||| | ||||||||||| ||||||    
T  37432639 ctcacattcattatctctcacacactctcatatgaaatggtacaatatatgtatg 37432585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 14786806 - 14786733
Alignment:
Q  61 ctctcacacactctcatatg-gagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctta 133  Q
    |||| ||||| ||||| ||| ||||||||||  ||||||||| ||||||  |||| ||||||||||||||||||    
T  14786806 ctcttacacaatctcacatgagagtggtacataatgtgtatgaaaaaaatggtgtccatgaaacattatcctta 14786733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 22364534 - 22364469
Alignment:
Q  68 acactctcatatgg-agtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    ||||||||| |||| |||||||||  || |||||||| ||||| |||| |||||||||||||||||    
T  22364534 acactctcacatgggagtggtacataatatgtatggagaaaagggtgttcatgaaacattatcctt 22364469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 30922836 - 30922705
Alignment:
Q  4 aattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatgga 103  Q
    ||||||||||||||| ||||| ||||| ||||||||       ||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  30922836 aattttgacaagtgtccttgtagtccccccacacacaaaaaaactcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatgga 30922737  T
Q  104 aaaaagtgtgtacatgaaacattatccttatt 135  Q
    ||||||| ||||||||||||||||||||||||    
T  30922736 aaaaagtatgtacatgaaacattatccttatt 30922705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 46576371 - 46576240
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    ||||||||| |||||||| |||||||| || ||||||||        |||||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  46576371 cacaattttaacaagtgtccttgtggttcccccacacacaaaaaaagtcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtat 46576272  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    ||||||||||||||||||||||||||||||||    
T  46576271 ggaaaaaagtgtgtacatgaaacattatcctt 46576240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 33496555 - 33496682
Alignment:
Q  4 aattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatgga 103  Q
    |||||||||||||||  ||||| |||| ||||||||       |||| || |||||||||||||||||||||| ||||||||||| ||| ||||||||||    
T  33496555 aattttgacaagtgtctttgtgatccccccacacacaaaaaaactcatatgtattgtctctcacacactctcacatggagtggtataatgtgtgtatgga 33496654  T
Q  104 aaaaagtgtgtacatgaaacattatcct 131  Q
    ||||||||||||||||||||||||||||    
T  33496655 aaaaagtgtgtacatgaaacattatcct 33496682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 52044 - 52118
Alignment:
Q  55 tattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatc 129  Q
    |||| |||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52044 tattatctctctcacactctcatatgtagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatc 52118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 48460759 - 48460830
Alignment:
Q  55 tattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacatt 126  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  48460759 tattgtctctcacacactctcacatggagtggtacaatgtgtgtgtggaaaaaagtgtgtacataaaacatt 48460830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 38754980 - 38754897
Alignment:
Q  47 ctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcc 130  Q
    ||||||| |||||||||||||||||||||| |||| |||||| ||| | |||||||||||||  |||||||||||| |||||||    
T  38754980 ctcacatttattgtctctcacacactctcacatggggtggtataatgtatgtatggaaaaaaaggtgtacatgaaatattatcc 38754897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 13768478 - 13768554
Alignment:
Q  58 tgtctctcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatg-aaacattatcctt 132  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||| |||||||| |||| |||| |||||||||||||    
T  13768478 tgtctctcaaacactctcatatggaagtgatacaatatgtgtatagaaaaaagggtgttcatgaaaacattatcctt 13768554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 28713786 - 28713860
Alignment:
Q  58 tgtctctcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcct 131  Q
    ||||||||| ||||||||| ||| | |||||||||||||||||| || ||||| |||| ||||||||||||||||    
T  28713786 tgtctctcaaacactctcacatgaaagtggtacaatatgtgtatagagaaaagggtgttcatgaaacattatcct 28713860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 38349532 - 38349455
Alignment:
Q  58 tgtctctcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatccttat 134  Q
    ||||||||| ||||||||| ||||| |||||||||| ||||||| ||  |||| |||| |||||||||||||||||||    
T  38349532 tgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatccttat 38349455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 47480095 - 47480012
Alignment:
Q  50 acatatattgtctctcacacactctcatatggag-tggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    |||| |||||||||| ||||||||||| |||| | ||||||||| ||||||||||| ||||||| ||||| ||| ||| |||||    
T  47480095 acatttattgtctcttacacactctcacatgggggtggtacaatgtgtgtatggaagaaagtgtatacattaaagattgtcctt 47480012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 31741148 - 31741217
Alignment:
Q  64 tcacacactctcatatgg-agtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    ||||||||||||| |||| |||||||||   ||||||| ||||||||  ||| |||||||||||||||||    
T  31741148 tcacacactctcacatgggagtggtacatagtgtgtatagaaaaaaggatgttcatgaaacattatcctt 31741217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 1995006 - 1995136
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    ||||||||||||||||||  ||||||||| |||||||||       ||||||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  1995006 cacaattttgacaagtgtctttgtggtcc-tccacacacaaaaaaactcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtat 1995104  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    ||||||||||||||||||||||||||||||||    
T  1995105 ggaaaaaagtgtgtacatgaaacattatcctt 1995136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 2403054 - 2402923
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    ||||||||||| |||||||||||||||||| |||||||        ||||||| ||||||||||| |||||||||| ||||| ||||||||| |||||||    
T  2403054 cacaattttgaaaagtgttcttgtggtccccccacacaaaaaaaaactcacatgtattgtctctcgcacactctcacatggaatggtacaatgtgtgtat 2402955  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    ||||||||||||||||||||||||||||||||    
T  2402954 ggaaaaaagtgtgtacatgaaacattatcctt 2402923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 32267594 - 32267463
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||| |||||||||| |||||| ||       ||||||| ||||| |||||||||||||||| ||||||| ||||||| |||||||    
T  32267594 cacaattttgacaagtgtccttgtggtccttccacatacaaaaaaactcacatgtattggctctcacacactctcacatggagtagtacaatgtgtgtat 32267495  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    |||||||||||||||||||||| |||||||||    
T  32267494 ggaaaaaagtgtgtacatgaaatattatcctt 32267463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 27325757 - 27325626
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactct-catatggagtggtacaatatgtgta 99  Q
    ||||||||||| |||||| |||||||| || ||||||||        |||||| |||||||||||||||||||| || ||||||||||||||| ||||||    
T  27325757 cacaattttgataagtgtccttgtggttcccccacacacaaaaaaagtcacatgtattgtctctcacacactcttcacatggagtggtacaatgtgtgta 27325658  T
Q  100 tggaaaaaagtgtgtacatgaaacattatcct 131  Q
    ||||||||||||||||||||||||||||||||    
T  27325657 tggaaaaaagtgtgtacatgaaacattatcct 27325626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 44797595 - 44797465
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    ||||||||||| |||||| ||||||||||| ||| ||||       ||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||    
T  44797595 cacaattttgataagtgtccttgtggtccc-ccaaacacaaaaaaactcacatgtattgtctctcacacactctcacatgaagtggtacaatgtgtgtat 44797497  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcctt 132  Q
     |||||||||||||||||||||||||||||||    
T  44797496 agaaaaaagtgtgtacatgaaacattatcctt 44797465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 29637339 - 29637211
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||| ||||||||||  ||||||||       |||| || ||||||||||| ||||||||||||||  |||||||||| |||||||    
T  29637339 cacaattttgacaagtgtccttgtggtcctcccacacacaaaaaaactcatatgtattgtctctctcacactctcatatgtggtggtacaatgtgtgtat 29637240  T
Q  101 ggaaaaaagtgtgtacatgaaacattatc 129  Q
    | |||||||||||||||||||||||||||    
T  29637239 gaaaaaaagtgtgtacatgaaacattatc 29637211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 40030887 - 40030969
Alignment:
Q  49 cacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcct 131  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  40030887 cacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatgaaaaaaagtgtgtacatgaaacattatcct 40030969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 15066096 - 15066019
Alignment:
Q  55 tattgtctctcacacactctcatatg-gagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcct 131  Q
    |||||||||||||||||||||| ||| |||||||||| | | |||||||||||||| |||| ||||||||||||||||    
T  15066096 tattgtctctcacacactctcacatgagagtggtacattgtatgtatggaaaaaagagtgttcatgaaacattatcct 15066019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 1673422 - 1673543
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    ||||||||||| |||||| |||||||| || | ||| ||       |||| || |||||||||||| ||||||| | ||| | ||||||||| |||||||    
T  1673422 cacaattttgataagtgtccttgtggttcccctacatacaaaaaaactcatatgtattgtctctcatacactcttacatgaaatggtacaatgtgtgtat 1673521  T
Q  101 ggaaaaaagtgtgtacatgaaa 122  Q
    ||||||||||||||||||||||    
T  1673522 ggaaaaaagtgtgtacatgaaa 1673543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 19989346 - 19989420
Alignment:
Q  58 tgtctctcacacactctcatatg-gagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||| || ||||| ||||  ||||||||||||||||    
T  19989346 tgtctctcacacactctcacatgagagtggtacaatgtgtgtat-gagaaaagagtgtctatgaaacattatcctt 19989420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 47571636 - 47571562
Alignment:
Q  58 tgtctctcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcct 131  Q
    ||||||||| ||||||||| ||||| |||||||||| ||||||| ||  |||| |||| ||||||||||||||||    
T  47571636 tgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcct 47571562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 526976 - 526907
Alignment:
Q  64 tcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    ||||||||||||| ||||| ||||||||   |||||||||| ||||| |||| |||||||||||||||||    
T  526976 tcacacactctcacatggaagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcctt 526907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 39858452 - 39858521
Alignment:
Q  64 tcacacactctcatatgg-agtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    |||||| ||||||||||| |||||||||   |||||||||| ||||| |||| |||||||||||||||||    
T  39858452 tcacactctctcatatgggagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcctt 39858521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 13276541 - 13276473
Alignment:
Q  64 tcacacactctcatatgg-agtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcct 131  Q
    ||||||||||||| |||| |||||||||   |||||||||| ||||| |||| ||||||||||||||||    
T  13276541 tcacacactctcacatgggagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 13276473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 29731297 - 29731369
Alignment:
Q  58 tgtctctcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatc 129  Q
    ||||||||| ||||||||| ||||| ||| |||||| ||||||| || ||||| |||| ||||||||||||||    
T  29731297 tgtctctcaaacactctcacatggaagtgatacaatgtgtgtatagagaaaagggtgttcatgaaacattatc 29731369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 46845733 - 46845666
Alignment:
Q  64 tcacacactctcatatgg-agtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcc 130  Q
    ||||||||||||| |||| |||||||||  ||||||||| | ||||| |||| |||||||||||||||    
T  46845733 tcacacactctcacatgggagtggtacataatgtgtatgcagaaaagggtgttcatgaaacattatcc 46845666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 40314197 - 40314265
Alignment:
Q  64 tcacacactctcatatgg-agtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcct 131  Q
    |||||||||||||||||| ||||||| |   | |||||||||||||  |||| ||||||||||||||||    
T  40314197 tcacacactctcatatgggagtggtatatagtatgtatggaaaaaatggtgttcatgaaacattatcct 40314265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 6e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 9045886 - 9046015
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    ||||||||||||||||||||||||||||| |||||||||       || |||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  9045886 cacaattttgacaagtgttcttgtggtcc-tccacacacacaaaaacttacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtat 9045984  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcct 131  Q
    | |||||||||||||||||||||||||||||    
T  9045985 gaaaaaaagtgtgtacatgaaacattatcct 9046015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 34792777 - 34792651
Alignment:
Q  4 aattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatgga 103  Q
    ||||||||||||||| ||||||||| ||| ||||||       ||||||| |||||||||||||||||||||| ||||||||||||||| |||||||| |    
T  34792777 aattttgacaagtgtccttgtggtctctctacacacacaaaaactcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatgca 34792678  T
Q  104 aaaaagtgtgtacatgaaacattatcc 130  Q
    |||||||||||||||||||||||||||    
T  34792677 aaaaagtgtgtacatgaaacattatcc 34792651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 1244685 - 1244554
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||| ||||||| ||||||||||| ||||||||       ||||||| |||||||||||  ||||||||||||| ||| ||||||| |||||||    
T  1244685 cacaattttggcaagtgtccttgtggtccccccacacacaaaaaaactcacatgtattgtctctcgaacactctcatatgaagtagtacaatgtgtgtat 1244586  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    | |||||| |||||||||||||||||||||||    
T  1244585 gaaaaaaaatgtgtacatgaaacattatcctt 1244554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 14314115 - 14313985
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||| |||||||| || ||||||||        |||||| |||||||||||||||||||||| ||  ||||||||||| |||||||    
T  14314115 cacaattttgacaagtgtccttgtggttcccccacacacaaaaaaagtcacatgtattgtctctcacacactctcacataaagtggtacaatgtgtgtat 14314016  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    ||| ||||||||||||||||||||||||||||    
T  14314015 gga-aaaagtgtgtacatgaaacattatcctt 14313985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 9521887 - 9521810
Alignment:
Q  55 tattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    |||||||||  ||||||| | | ||||  ||||||||| |||||||||| |||||  |||||||||||||||||||||    
T  9521887 tattgtctcctacacacttttacatgggatggtacaatgtgtgtatggagaaaaggatgtacatgaaacattatcctt 9521810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 16718106 - 16718179
Alignment:
Q  58 tgtctctcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcc 130  Q
    ||||||||| ||||| ||| ||||| |||||||||| ||||||| || ||||| |||| |||||||||||||||    
T  16718106 tgtctctcaaacactatcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 16718179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 12748321 - 12748397
Alignment:
Q  58 tgtctctcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctta 133  Q
    ||||||||| ||||||||| ||||| |||||||||| |||||||  | ||||| ||||  |||||||||||||||||    
T  12748321 tgtctctcaaacactctcacatggaagtggtacaatgtgtgtataaagaaaagggtgtttatgaaacattatcctta 12748397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 23916077 - 23916148
Alignment:
Q  64 tcacacactctcatatgg-agtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatccttat 134  Q
    ||||||||||||| |||| |||||||||   |||||||| | ||||| |||| |||||||||||||||||||    
T  23916077 tcacacactctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatccttat 23916148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 4076852 - 4076767
Alignment:
Q  47 ctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    ||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4076852 ctcacatgtattgtctctcacacactctcacatagagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 4076767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 14342269 - 14342186
Alignment:
Q  48 tcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcct 131  Q
    |||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14342269 tcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 14342186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 43066033 - 43065903
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||| ||||||||||| ||||||||       ||||||| |||||||||||||||||||||| ||||| ||||||||| | |||||    
T  43066033 cacaattttgacaagtgtccttgtggtccc-ccacacacaaaaaaactcacatgtattgtctctcacacactctcacatggaatggtacaatgtatgtat 43065935  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    |||||||| ||||||||| |||||||||||||    
T  43065934 ggaaaaaaatgtgtacataaaacattatcctt 43065903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 1993769 - 1993638
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnn-ctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgta 99  Q
    |||||||||||||||||| ||||||||| | |||||||         ||||||| |||||||||||| ||||||||| ||| | ||||||||| ||||||    
T  1993769 cacaattttgacaagtgtccttgtggtctccccacacataaaaaaaactcacatgtattgtctctcatacactctcacatgaaatggtacaatgtgtgta 1993670  T
Q  100 tggaaaaaagtgtgtacatgaaacattatcct 131  Q
    || ||||||||||||||| |||||||||||||    
T  1993669 tgaaaaaaagtgtgtacacgaaacattatcct 1993638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 11904962 - 11905035
Alignment:
Q  58 tgtctctcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcc 130  Q
    ||||||||| ||||||||| ||||| |||||||||| ||||||| || ||||| |||| |||||||||||||||    
T  11904962 tgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 11905035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 5749109 - 5749029
Alignment:
Q  50 acatatattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcc 130  Q
    |||| |||||||||||||||||||||| |||| |||||| ||| | |||||| ||||||   ||||||||||| |||||||    
T  5749109 acatttattgtctctcacacactctcacatggggtggtataatgtatgtatgaaaaaaaagatgtacatgaaatattatcc 5749029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 35200665 - 35200741
Alignment:
Q  58 tgtctctcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctta 133  Q
    ||||||||| ||||||||| ||||| |||||||||| ||||||| || ||||| |||| ||| ||||||||||||||    
T  35200665 tgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatcaaacattatcctta 35200741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 16465681 - 16465610
Alignment:
Q  57 ttgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattat 128  Q
    |||||||||||||| ||| | |||| |||||||| | ||||||| |||||||  |||| |||||||||||||    
T  16465681 ttgtctctcacacattctgaaatggggtggtacattgtgtgtattgaaaaaaaggtgtccatgaaacattat 16465610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 28898100 - 28898167
Alignment:
Q  64 tcacacactctcatatg-gagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcc 130  Q
    ||||||||||||||||| ||||||||||   |||||||||| ||||  |||| |||||||||||||||    
T  28898100 tcacacactctcatatgagagtggtacatagtgtgtatggagaaaatggtgttcatgaaacattatcc 28898167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 8368445 - 8368370
Alignment:
Q  57 ttgtctctcacacactctca-tatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    |||||||||||||||||| | ||||| |||| ||| | |||||||||| |||| |||||  ||||||||||||||||    
T  8368445 ttgtctctcacacactcttactatgg-gtggcacattgtgtgtatggagaaaaatgtgtcaatgaaacattatcctt 8368370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 31774836 - 31774913
Alignment:
Q  58 tgtctctcacacactctcatatgg-agtggtacaatatgtgtatg-gaaaaaagtgtgtacatgaaacattatccttatt 135  Q
    ||||| ||||||||||||| |||  ||||||||||| |||||||| ||||| ||||| |||  |||||||||||||||||    
T  31774836 tgtctttcacacactctcacatgatagtggtacaatgtgtgtatgagaaaatagtgtctac--gaaacattatccttatt 31774913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 38247851 - 38247979
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||| |||||||| || ||||||||        |||||| |||||||||||||||||||||| || |||||||||||| |||||||    
T  38247851 cacaattttgacaagtgtccttgtggttcccccacacacaaaaaaagtcacatgtattgtctctcacacactctcacatagagtggtacaatgtgtgtat 38247950  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcc 130  Q
    || |||||||||||||||||||||||||||    
T  38247951 gg-aaaaagtgtgtacatgaaacattatcc 38247979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 48034937 - 48034808
Alignment:
Q  2 acaattttgacaagtgttcttgtggtccctcc-acacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    ||||||||||||||||| ||||||||||| || ||||||       |||| || |||||||||||||||||||||| ||| ||||||||||| |||||||    
T  48034937 acaattttgacaagtgtccttgtggtcccccccacacacaaaaaaactcaaatgtattgtctctcacacactctcacatgaagtggtacaatgtgtgtat 48034838  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcc 130  Q
    |||||||||||||||||| |||||||||||    
T  48034837 ggaaaaaagtgtgtacataaaacattatcc 48034808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 9271166 - 9271296
Alignment:
Q  4 aattttgacaagtgttcttgtggtccctccacacacnnnnnnn--ctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatg 101  Q
    ||||||||||||||| ||||||||||||||||||||         ||||||| ||||||| |||||||||||| | ||| ||||||||||||| ||||||    
T  9271166 aattttgacaagtgtccttgtggtccctccacacacacaaaaaaactcacatgtattgtccctcacacactcttacatgaagtggtacaatatatgtatg 9271265  T
Q  102 gaaaaaagtgtgtacatgaaacattatcctt 132  Q
     ||||||||||||||||||||||||||||||    
T  9271266 aaaaaaagtgtgtacatgaaacattatcctt 9271296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 12224132 - 12224006
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||| |||||||||||  |||||||       ||||||| ||||||||||||||||||||||  || ||||||||||  |||||||    
T  12224132 cacaattttgacaagtgtccttgtggtcccctcacacacaagaaaactcacatgtattgtctctcacacactctcacctgaagtggtacaag-tgtgtat 12224034  T
Q  101 ggaaaaaagtgtgtacatgaaacattat 128  Q
    ||||||||||||||||||||||||||||    
T  12224033 ggaaaaaagtgtgtacatgaaacattat 12224006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 50989256 - 50989385
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||| ||||||||||| | | || |       ||||||| |||||||||||||||||||||| ||| ||||||| ||| |||||||    
T  50989256 cacaattttgacaagtgtccttgtggtccccctaaacgcaaaaaaactcacatgtattgtctctcacacactctcacatgaagtggtataatgtgtgtat 50989355  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcc 130  Q
      |||||| |||||||||||||||||||||    
T  50989356 aaaaaaaaatgtgtacatgaaacattatcc 50989385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 51092388 - 51092517
Alignment:
Q  1 cacaattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtat 100  Q
    |||||||||||||||||| ||||||||||| | | || |       ||||||| |||||||||||||||||||||| ||| ||||||| ||| |||||||    
T  51092388 cacaattttgacaagtgtccttgtggtccccctaaacgcaaaaaaactcacatgtattgtctctcacacactctcacatgaagtggtataatgtgtgtat 51092487  T
Q  101 ggaaaaaagtgtgtacatgaaacattatcc 130  Q
      |||||| |||||||||||||||||||||    
T  51092488 aaaaaaaaatgtgtacatgaaacattatcc 51092517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 8496814 - 8496887
Alignment:
Q  55 tattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattat 128  Q
    |||||||||||||| ||||||| ||||||||||| ||| |||||||| |||||||||||| |||||||||||||    
T  8496814 tattgtctctcacatactctcacatggagtggtagaatgtgtgtatgaaaaaaagtgtgtgcatgaaacattat 8496887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 54713631 - 54713708
Alignment:
Q  55 tattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    |||||||||||||||||||||| |||| ||  || ||| | ||| |||||||||| |||||||||||| |||||||||    
T  54713631 tattgtctctcacacactctcacatggggttatataatgtatgtgtggaaaaaagggtgtacatgaaatattatcctt 54713708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 36674592 - 36674519
Alignment:
Q  58 tgtctctcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcc 130  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||| || |||||  ||| |||||||||| ||||    
T  36674592 tgtctctcaaacactctcatatggaagtggtacaatgtgtgtatagagaaaaggatgttcatgaaacataatcc 36674519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 46135636 - 46135708
Alignment:
Q  60 tctctcacacactctcatat-ggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcct 131  Q
    ||||||||||||||||| || || |||||||||| |||||||||| ||||   ||| ||||||||||||||||    
T  46135636 tctctcacacactctcacataggggtggtacaatgtgtgtatggagaaaatgatgttcatgaaacattatcct 46135708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 23004870 - 23004938
Alignment:
Q  64 tcacacactctcatatgga-gtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcct 131  Q
    ||||||||||||| ||||| ||||| ||   |||||||||| ||||| |||| ||||||||||||||||    
T  23004870 tcacacactctcacatggaagtggtgcatagtgtgtatggagaaaagggtgttcatgaaacattatcct 23004938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 3131 - 3054
Alignment:
Q  55 tattgtctctcacacactctcatatggagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 132  Q
    |||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  3131 tattgtctctcatacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtatatgaaacattatcctt 3054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 10357 - 10232
Alignment:
Q  4 aattttgacaagtgttcttgtggtccctccacacacnnnnnnnctcacatatattgtctctcacacactctcatatggagtggtacaatatgtgtatgga 103  Q
    ||||||||||||||| ||||||||||   |||||||       ||||||| |||||||||||||| ||||||| ||||||||||||||| ||||||||||    
T  10357 aattttgacaagtgtccttgtggtcctctcacacacaaaaaaactcacatgtattgtctctcacatactctcacatggagtggtacaatgtgtgtatgga 10258  T
Q  104 aaaaagtgtgtacatgaaacattatcc 130  Q
     ||||||| ||||||||||||||||||    
T  10257 -aaaagtgcgtacatgaaacattatcc 10232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 52924 - 52997
Alignment:
Q  61 ctctcacacactctcatatg-gagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctta 133  Q
    |||| ||||| ||||| ||| ||||||||||  ||||||||| ||||||  |||| ||||||||||||||||||    
T  52924 ctcttacacaatctcacatgagagtggtacataatgtgtatgaaaaaaatggtgtccatgaaacattatcctta 52997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University