View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16237_high_2 (Length: 619)
Name: NF16237_high_2
Description: NF16237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16237_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 22 - 616
Target Start/End: Original strand, 7544185 - 7544779
Alignment:
| Q |
22 |
gactcatcatatgtgcctttgtcacgccattcactatctgttttctcatgatctagaagatttggcggcttgaccagaggcctcttcttcgcaactcttt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7544185 |
gactcatcatatgtgcctttgtcacgccattcactatctgttttctcatgatctagaagatttggcggcttgaccagaggcctcttcttcgcaactcttt |
7544284 |
T |
|
| Q |
122 |
attaggattcagaaaagaaacattaagttgctggaaactgtcaaaatgtttaccgactttgtggagagaattttactcttcttataatttagacttggac |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7544285 |
attaggattcagaaaagaaacattaagttgctggaaactgtcaaaatgtttaccgactttgtggagagaattttactcttcttataatttagacttggac |
7544384 |
T |
|
| Q |
222 |
aactgattagccaagattaacacttcttttgcgcaaagtgcaaaatcttcaagtaaatacatatgtgagcatatttctgagatacacgcctttaagaagt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7544385 |
aactgattagccaagattaacacttcttttgcgcaaagtgcaaaatcttcaagtaaatacatatgtgagcatatttctgagatacacgcctttaagaagt |
7544484 |
T |
|
| Q |
322 |
actataagctaaaatggcaccttcgaaactccacttatatgattcgacggatggatgaggttttagttgatgtcacttctattcctgtgcttctttcatc |
421 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7544485 |
actttaagttaaaatggcaccttcgaaactccacttatatgattcgacggatggatgaggttttagttgatgtcacttctattcctgtgcttctttcatc |
7544584 |
T |
|
| Q |
422 |
ttgattgatgatgaattccccggatgaccgactcatgttggtaacttaactttccttgacgtatatcaattctttaaaactaatttgtccaagaaatccg |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7544585 |
ttgattgatgatgaattccccggatgaccgactcatgttggtaacttaactttccttgacgtatatcaattctttaaaactaatttgtccaagaaatccg |
7544684 |
T |
|
| Q |
522 |
acaagaatgttacttttaatgttcgtaaccaacctattatgaaggagtttctgcatggttccattgaaaccatattattttatgaacgtattcat |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7544685 |
acaagaatgttacttttaatgttcgtaaccaacctattatgaaggagtttctgcatggttccattgaaaccatattattttatgaacgtattcat |
7544779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University