View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16237_high_4 (Length: 559)
Name: NF16237_high_4
Description: NF16237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16237_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 15 - 540
Target Start/End: Complemental strand, 2185245 - 2184720
Alignment:
| Q |
15 |
catagggtggtggactgggaaagttgacatggttgggtggtggccgcaaagtctatgctatctgaatatcttgatttgtatcacgataactttattttat |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
2185245 |
catagggtggtggaccgggaaagttgacatggttgggtggtggctgcaaagtctatgctatctgaatatcttgatctatatcacgataacgttattttat |
2185146 |
T |
|
| Q |
115 |
gttttgttatacaaataataacttatacataaaaacttacatgatacacacttatattacaagtgcttaattaagttattaattcaaggctgggaattca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2185145 |
gttttgttatacaaataataacttatacataaaaacttacatgatacacacttatattacaagtgcttaattaagttattaattcaaggctgggaattca |
2185046 |
T |
|
| Q |
215 |
gaagaggaatgctctgctcattcctgaaaaagttttggggatcaaattttgtcttaatttgggccaaacgcttaaagtttcccttaaagtacttgatgcc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2185045 |
gaagaggaatgctctgctcattcctgaaaaagttttggggatcaaattttgtcttaatttgggccaaacgcttaaagtttcccttaaagtacttgatgcc |
2184946 |
T |
|
| Q |
315 |
ccaaacacttgcttctgagtagcttgtgttgtcatgcttgttgctacctaaatcaagatccctatagttgtaatatgcagctcttggagactttgaaaca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2184945 |
ccaaacacttgcttctgagtagcttgtgttgtcatgcttgttgctacctaaatcaagatccctatagttgtaatatgcagctcttggagactttgaaaca |
2184846 |
T |
|
| Q |
415 |
taaggagtcatgtatccataaagcattctcatccactttatatgcttgttggattcttcaatgctattcacttcccacttgacaaagtattgtatgttga |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2184845 |
taaggagtcatgtatccataaagcattctcatccactttatatgcttgttggattcttcaatgctattcacttcccacttgacaaagtattgtatgttga |
2184746 |
T |
|
| Q |
515 |
acaagtttccttttctatgtggaaaa |
540 |
Q |
| |
|
|||||||||||||||| || |||||| |
|
|
| T |
2184745 |
acaagtttccttttctgtgaggaaaa |
2184720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 168 - 540
Target Start/End: Complemental strand, 2153478 - 2153106
Alignment:
| Q |
168 |
atattacaagtgcttaattaagttattaattcaaggctgggaattcagaagaggaatgctctgctcattcctgaaaaagttttggggatcaaattttgtc |
267 |
Q |
| |
|
|||||| |||||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2153478 |
atattaaaagtgcttgattaagttgttaattcaggggagggaattcagaagaggaatgctctgctcattcctgaaaaagttttggggatcaaattttgtc |
2153379 |
T |
|
| Q |
268 |
ttaatttgggccaaacgcttaaagtttcccttaaagtacttgatgccccaaacacttgcttctgagtagcttgtgttgtcatgcttgttgctacctaaat |
367 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2153378 |
ttaatttgtgccaaacgcttaaagtttcccttaaagtacttgatgccccaaacacttgcttctgagtagcttgtgttgtcatgcttgttgctacctaaat |
2153279 |
T |
|
| Q |
368 |
caagatccctatagttgtaatatgcagctcttggagactttgaaacataaggagtcatgtatccataaagcattctcatccactttatatgcttgttgga |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2153278 |
caagatccctatagttgtaatatgcagctcttggagactttgaaacataaggagtcatgtatccataaagcattctcatccactttatatgcttgttgga |
2153179 |
T |
|
| Q |
468 |
ttcttcaatgctattcacttcccacttgacaaagtattgtatgttgaacaagtttccttttctatgtggaaaa |
540 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2153178 |
ttcttcaatactattcacttcccactggacaaagtattgtatgttgaacaagtttccttttctatgtggaaaa |
2153106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 149 - 540
Target Start/End: Complemental strand, 2177156 - 2176765
Alignment:
| Q |
149 |
acttacatgatacacacttatattacaagtgcttaattaagttattaattcaaggctgggaattcagaagaggaatgctctgctcattcctgaaaaagtt |
248 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2177156 |
acttacatgatacaagcttatactataagtgcttaattaagttttaaattcaggggagggaattcagaagaggaatgctctgctcattcctgaaaaagtt |
2177057 |
T |
|
| Q |
249 |
ttggggatcaaattttgtcttaatttgggccaaacgcttaaagtttcccttaaagtacttgatgccccaaacacttgcttctgagtagcttgtgttgtca |
348 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2177056 |
ttggggatcaaattttgtcttaatttgtgccaaacgcttaaagtttcccttaaagtacttgatgccccaaacacttgcttctgagtatcttgtgttgtca |
2176957 |
T |
|
| Q |
349 |
tgcttgttgctacctaaatcaagatccctatagttgtaatatgcagctcttggagactttgaaacataaggagtcatgtatccataaagcattctcatcc |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2176956 |
tgcttgttgctacctaaatcaagatccctatagttgtaatatgcagctcttggagactttgaaacataaggagtcatgtatccataaagcattctcatcc |
2176857 |
T |
|
| Q |
449 |
actttatatgcttgttggattcttcaatgctattcacttcccacttgacaaagtattgtatgttgaacaagtttccttttctatgtggaaaa |
540 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| |||| |||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
2176856 |
actttatatgtttgttggattcttcaatgctatttgtatcccacttaacaatatattgtatgttgtacatgtttccttttctatgtggaaaa |
2176765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 207 - 540
Target Start/End: Complemental strand, 2197638 - 2197305
Alignment:
| Q |
207 |
ggaattcagaagaggaatgctctgctcattcctgaaaaagttttggggatcaaattttgtcttaatttgggccaaacgcttaaagtttcccttaaagtac |
306 |
Q |
| |
|
|||||| || |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2197638 |
ggaatttagtagaggaatactctgctcattcctgaaaaagttttggggatcaaatattgtcttaatttgtgccaaacgcttaaagtttcccttaaagtac |
2197539 |
T |
|
| Q |
307 |
ttgatgccccaaacacttgcttctgagtagcttgtgttgtcatgcttgttgctacctaaatcaagatccctatagttgtaatatgcagctcttggagact |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2197538 |
ttgatgccccaaacacttgcttctgagtagcttgtgttaaaatgcttgttcctacctatatcaagatccctatagttgtaatatgcagctcttggagact |
2197439 |
T |
|
| Q |
407 |
ttgaaacataaggagtcatgtatccataaagcattctcatccactttatatgcttgttggattcttcaatgctattcacttcccacttgacaaagtattg |
506 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||||||||||||||| |||||||| |||||||||||||||||||||||||| || | |||||| |
|
|
| T |
2197438 |
ttgaaacataaggagtcatgtatctataaagttttttcatccactttatatgtttgttggactcttcaatgctattcacttcccacttaaccatgtattg |
2197339 |
T |
|
| Q |
507 |
tatgttgaacaagtttccttttctatgtggaaaa |
540 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||| |
|
|
| T |
2197338 |
tatgttgtacaagtttccttttctgtgtggaaaa |
2197305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 101 - 187
Target Start/End: Complemental strand, 2153663 - 2153581
Alignment:
| Q |
101 |
taactttattttatgttttgttatacaaataataacttatacataaaaacttacatgatacacacttatattacaagtgcttaatta |
187 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||| || ||||||||||||| |
|
|
| T |
2153663 |
taactttattttatcttttgttataca---cgtaacttatacataaacacttacatgatacacgcttata-tataagtgcttaatta |
2153581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 209 - 542
Target Start/End: Complemental strand, 35539523 - 35539190
Alignment:
| Q |
209 |
aattcagaagaggaatgctctgctcattcctgaaaaagttttggggatcaaattttgtcttaatttgggccaaacgcttaaagtttcccttaaagtactt |
308 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35539523 |
aatttagaagaggaataatctgctctttcctgaaaaagttttggggatcaaattttgtcttaatttgtgccaaacgcttaaagtttcccttaaagtactt |
35539424 |
T |
|
| Q |
309 |
gatgccccaaacacttgcttctgagtagcttgtgttgtcatgcttgttgctacctaaatcaagatccctatagttgtaatatgcagctcttggagacttt |
408 |
Q |
| |
|
|| |||| || |||||||| ||||||||||||||| | ||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35539423 |
catacccctaaaacttgcttatgagtagcttgtgttattatgcttgttccttcctatatcaagatccctatagttgtaatatgcagctcttggagacttt |
35539324 |
T |
|
| Q |
409 |
gaaacataaggagtcatgtatccataaagcattctcatccactttatatgcttgttggattcttcaatgctattcacttcccacttgacaaagtattgta |
508 |
Q |
| |
|
|||||||||| |||||||||| || | | || |||||||||||||||| | ||||| ||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
35539323 |
gaaacataagaagtcatgtatttattatgttttttcatccactttatatgtcttttggactcttcaatgctattcacttcccacttgaccatgtattgta |
35539224 |
T |
|
| Q |
509 |
tgttgaacaagtttccttttctatgtggaaaatg |
542 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||| |
|
|
| T |
35539223 |
tgttgtacaagtttccttttcaatgtggaaaatg |
35539190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 434
Target Start/End: Original strand, 11810593 - 11810666
Alignment:
| Q |
361 |
cctaaatcaagatccctatagttgtaatatgcagctcttggagactttgaaacataaggagtcatgtatccata |
434 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||||| |||||| |||||||| ||||||||| |||| |
|
|
| T |
11810593 |
cctaaatcaaggtccctataattcaaatatgcagctcttggaccctttgatacataaggtgtcatgtatgcata |
11810666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 449
Target Start/End: Original strand, 11802849 - 11802937
Alignment:
| Q |
361 |
cctaaatcaagatccctatagttgtaatatgcagctcttggagactttgaaacataaggagtcatgtatccataaagcattctcatcca |
449 |
Q |
| |
|
|||| |||||| ||||||||||| ||||||| ||||||| |||||||||||||||| ||||||||| |||| | | |||||||||| |
|
|
| T |
11802849 |
cctatatcaaggtccctatagttcaaatatgctactcttgggcactttgaaacataaggtgtcatgtatgcatataaccttctcatcca |
11802937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 37758896 - 37758817
Alignment:
| Q |
19 |
gggtggtggactgggaaagttgacatggttgggtggtggccgcaaagtctatgctatctgaatatcttgatttgtatcac |
98 |
Q |
| |
|
|||||||||| || ||||| | |||| | || ||||||| ||||||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
37758896 |
gggtggtggaatgagaaagctagcatgataggttggtggctgcaaagtctatgctatcagaatgtcttgatctgtatcac |
37758817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 38059343 - 38059290
Alignment:
| Q |
366 |
atcaagatccctatagttgtaatatgcagctcttggagactttgaaacataagg |
419 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
38059343 |
atcaagatctctatagttaatatatgcagctcttggagactttgaaacaaaagg |
38059290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 38061111 - 38061164
Alignment:
| Q |
366 |
atcaagatccctatagttgtaatatgcagctcttggagactttgaaacataagg |
419 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
38061111 |
atcaagatctctataattgatatatgcagctcttggtgactttgaaacaaaagg |
38061164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 419
Target Start/End: Complemental strand, 38073656 - 38073624
Alignment:
| Q |
387 |
atatgcagctcttggagactttgaaacataagg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
38073656 |
atatgcagctcttggagactttgaaacaaaagg |
38073624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 18011825 - 18011788
Alignment:
| Q |
165 |
cttatattacaagtgcttaattaagttattaattcaag |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
18011825 |
cttatattataagtgcttaattaagttatttattcaag |
18011788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 49060519 - 49060436
Alignment:
| Q |
103 |
actttattttatgttttgttatacaaataataacttatacataaaaacttacatgatacacacttatattacaagtgcttaattaag |
189 |
Q |
| |
|
|||||||||||| |||||||||| ||||| |||||||||||| ||||| |||||| | ||||| || ||||||||||||||| |
|
|
| T |
49060519 |
actttattttattttttgttatagaaatag---cttatacataaatacttatatgataagccattatactataagtgcttaattaag |
49060436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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