View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16237_low_11 (Length: 254)
Name: NF16237_low_11
Description: NF16237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16237_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 42155919 - 42155694
Alignment:
| Q |
11 |
gcagaacctgtggcgctgaaatttgaaatatatgctattgtttgttaatattaaatttgtgaatctacctatcattctgttattttccctttggatcagt |
110 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42155919 |
gcagagcctctggcgctgaaatttgaaatatatgctattgtttgttaatattaaatttgtgaatctacctatcattctgttattttccctttggatcagt |
42155820 |
T |
|
| Q |
111 |
agttgttatcacaaaaatccaacgtttaatttgtaaattatcaaaccaaatccccaacggtccaatttcacgtgatcacctctaagataaacaagaataa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42155819 |
agttgttatcacaaaaatccaacgtttaatttgtaaattatcaaaccaaatccccaacggtccaatttcacgtgaccacctctaagataaacaagaataa |
42155720 |
T |
|
| Q |
211 |
acaatctaaaacaggacggtaactaa |
236 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
42155719 |
acaatctaaaacaggacggtaactaa |
42155694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University