View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16237_low_13 (Length: 238)

Name: NF16237_low_13
Description: NF16237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16237_low_13
NF16237_low_13
[»] chr6 (3 HSPs)
chr6 (122-221)||(731702-731800)
chr6 (13-93)||(731596-731676)
chr6 (137-205)||(728263-728330)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 731702 - 731800
Alignment:
Q  122 cctacttcgtttccatgtaaatggaaataataagtagtttctaacgttttgtcacactggtcctgttagtccttggttgtatatttatttgactaatgag 221  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  731702 cctacttcgtttccatgtaaatggaaata-taagtagtttctaacgttttgtcacaccggtcctgttagtccttggttgtatatttatttgactaatgag 731800  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 731596 - 731676
Alignment:
Q  13 gcaaaggcaaaacgtaatgaaatgaatcagaannnnnnnncttccaccccttttagtaaaatcaaaattctgtccagtttc 93  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||| |||||||||||||||    
T  731596 gcaaaggcaaaacgtaatgaaatgaatcagaatttttttacttccaccccttttagtaaaatcaagattctgtccagtttc 731676  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 728263 - 728330
Alignment:
Q  137 tgtaaatggaaataataagtagtttctaacgttttgtcacactggtcctgttagtccttggttgtatat 205  Q
    |||||| | |||||||||||||||||||||| ||||||||||| || | | |||||||||||| |||||    
T  728263 tgtaaacgaaaataataagtagtttctaacgctttgtcacactagttc-ggtagtccttggttatatat 728330  T

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