View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16237_low_17 (Length: 205)

Name: NF16237_low_17
Description: NF16237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16237_low_17
NF16237_low_17
[»] chr8 (15 HSPs)
chr8 (14-187)||(5568658-5568831)
chr8 (14-187)||(14403228-14403401)
chr8 (14-179)||(5598399-5598564)
chr8 (14-179)||(5636711-5636876)
chr8 (14-187)||(5624520-5624693)
chr8 (14-187)||(6313682-6313855)
chr8 (14-187)||(13164355-13164528)
chr8 (14-187)||(5547499-5547678)
chr8 (14-139)||(5562331-5562456)
chr8 (70-187)||(12178726-12178840)
chr8 (70-187)||(12190421-12190535)
chr8 (70-187)||(12423154-12423268)
chr8 (70-187)||(12434849-12434963)
chr8 (22-147)||(32632656-32632781)
chr8 (14-86)||(5572781-5572853)
[»] scaffold0363 (1 HSPs)
scaffold0363 (14-187)||(15452-15625)
[»] chr2 (3 HSPs)
chr2 (31-137)||(19496002-19496108)
chr2 (79-119)||(16334755-16334795)
chr2 (68-124)||(17660989-17661045)


Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 5568658 - 5568831
Alignment:
Q  14 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5568658 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacatggtgtttgaa 5568757  T
Q  114 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctacc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  5568758 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacattggtgtgattcctgtgttctacc 5568831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 14403228 - 14403401
Alignment:
Q  14 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 113  Q
    ||||||| |||||| |||||||||  ||||||||||||||||| ||||| ||||||||||||||||| |||||||| || |||||||||| |||||||||    
T  14403228 gagatgatgtttggtcagaacttgttaaagcaatcaaacaatccactctttttcttgttgtgttctcggagaactacgcgtcttcaacatggtgtttgaa 14403327  T
Q  114 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctacc 187  Q
     ||||| |||||| ||||||||||  |||||||||||||||| |||||||||| |||| |||||||||||||||    
T  14403328 cgaactggttgaaataatggagtgtagtaacaaaaatgaagatgacaacgttgttgttgttcctgtgttctacc 14403401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 5598564 - 5598399
Alignment:
Q  14 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 113  Q
    |||||||||||||| |||||||||  |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  5598564 gagatgaagtttggtcagaacttgttaaagcaatcaaagaatccactctgtttcttgttgtgttctcagagaactatgcatcttcaacatggtgtttgaa 5598465  T
Q  114 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgt 179  Q
     ||||| ||| || ||||||||||  ||||||||||||| || |||||||||| ||| ||||||||    
T  5598464 cgaactcgttcaaataatggagtgtggtaacaaaaatgaggatgacaacgttgttgtcattcctgt 5598399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 5636711 - 5636876
Alignment:
Q  14 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 113  Q
    |||||||||||||| |||||||||  |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  5636711 gagatgaagtttggtcagaacttgttaaagcaatcaaagaatccactctgtttcttgttgtgttctcagagaactatgcatcttcaacatggtgtttgaa 5636810  T
Q  114 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgt 179  Q
     ||||| ||| || ||||||||||  ||||||||||||| || |||||||||| ||| ||||||||    
T  5636811 cgaactcgttcaaataatggagtgtggtaacaaaaatgaggatgacaacgttgttgtcattcctgt 5636876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 5624520 - 5624693
Alignment:
Q  14 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 113  Q
    |||||||||||||| ||||||||| |||||||||||||||||| ||||||| |||||| |||||||| |||||||| || || ||||||| |||||||||    
T  5624520 gagatgaagtttgggcagaacttgtgaaagcaatcaaacaatccactctgtatcttgtggtgttctcggagaactacgcgtcatcaacatggtgtttgaa 5624619  T
Q  114 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctacc 187  Q
     ||||| ||| || ||||||||||   ||||||||||||||| ||||| |||| ||||||||||||||||||||    
T  5624620 cgaactcgttcaaataatggagtgtaataacaaaaatgaagatgacaatgttgttgttattcctgtgttctacc 5624693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 6313855 - 6313682
Alignment:
Q  14 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 113  Q
    ||||||||||||||  |||||| | |||||||||||||||||| ||| | |||||||| |||||||| || |||||||| |||||||||| |||||||||    
T  6313855 gagatgaagtttgggtagaactagtgaaagcaatcaaacaatccactatatttcttgtggtgttctcggaaaactatgcctcttcaacatggtgtttgaa 6313756  T
Q  114 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctacc 187  Q
     |||||||||||| ||||||||||  |||||||||||||||| ||||| |||| ||||||||| ||||||||||    
T  6313755 cgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaggttgttgttattccagtgttctacc 6313682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 13164355 - 13164528
Alignment:
Q  14 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 113  Q
    ||||||||||||||  ||||||| |||||||||||||  |||| ||||| |||||||| ||||||||||||||||| || | |||||||| |||||||||    
T  13164355 gagatgaagtttggggagaacttcagaaagcaatcaatgaatccactctttttcttgtcgtgttctcagagaactacgcattttcaacatggtgtttgaa 13164454  T
Q  114 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctacc 187  Q
     ||||| ||| || ||||||||||  | ||||| |||||| | || ||||||| ||||||||||||||||||||    
T  13164455 cgaactagttcaaataatggagtgtagcaacaacaatgaaaatgataacgttgttgttattcctgtgttctacc 13164528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 5547499 - 5547678
Alignment:
Q  14 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 113  Q
    ||||| |||||||| ||||||||| ||| ||||| |||||||| ||| |||||||||| ||||||||  ||||||| || |||||||||| |||||||||    
T  5547499 gagatcaagtttgggcagaacttgtgaaggcaatgaaacaatccactttgtttcttgtcgtgttctcgaagaactacgcatcttcaacatggtgtttgaa 5547598  T
Q  114 tgaacttgttgaactaatggagtg------ccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctacc 187  Q
     ||||| |||||  |||||||||       |  ||||||||||||||| |||||||||| ||||||||||||||||||||    
T  5547599 cgaactggttgagataatggagttattcgacattaacaaaaatgaagatgacaacgttgttgttattcctgtgttctacc 5547678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 5562331 - 5562456
Alignment:
Q  14 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 113  Q
    |||||||||||||| ||||||||| ||| ||||| |||||||| ||| |||||||||| |||||||| |||||||| || |||||||||| |||||||||    
T  5562331 gagatgaagtttgggcagaacttgtgaaggcaatgaaacaatccactttgtttcttgtcgtgttctcggagaactacgcgtcttcaacatggtgtttgaa 5562430  T
Q  114 tgaacttgttgaactaatggagtgcc 139  Q
    |||||| ||| || ||||||| ||||    
T  5562431 tgaactcgttcaaataatggaatgcc 5562456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 12178840 - 12178726
Alignment:
Q  70 gttgtgttctcagagaactatgcttcttcaacattgtgtttgaatgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtg 169  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||| ||||| |||||   || |||||||| || |||||||||| ||    
T  12178840 gttgtgttctcagaaaactatgcatcttcaacatggtgtttgaatgaactcgttgaaataatgaagtgc---aaaaaaaatgacgaagacaacgttgttg 12178744  T
Q  170 ttattcctgtgttctacc 187  Q
    ||||||||||||||||||    
T  12178743 ttattcctgtgttctacc 12178726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 12190535 - 12190421
Alignment:
Q  70 gttgtgttctcagagaactatgcttcttcaacattgtgtttgaatgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtg 169  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||| ||||| |||||   || |||||||| || |||||||||| ||    
T  12190535 gttgtgttctcagaaaactatgcatcttcaacatggtgtttgaatgaactcgttgaaataatgaagtgc---aaaaaaaatgacgaagacaacgttgttg 12190439  T
Q  170 ttattcctgtgttctacc 187  Q
    ||||||||||||||||||    
T  12190438 ttattcctgtgttctacc 12190421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 12423268 - 12423154
Alignment:
Q  70 gttgtgttctcagagaactatgcttcttcaacattgtgtttgaatgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtg 169  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||| ||||| |||||   || |||||||| || |||||||||| ||    
T  12423268 gttgtgttctcagaaaactatgcatcttcaacatggtgtttgaatgaactcgttgaaataatgaagtgc---aaaaaaaatgacgaagacaacgttgttg 12423172  T
Q  170 ttattcctgtgttctacc 187  Q
    ||||||||||||||||||    
T  12423171 ttattcctgtgttctacc 12423154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 12434963 - 12434849
Alignment:
Q  70 gttgtgttctcagagaactatgcttcttcaacattgtgtttgaatgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtg 169  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||| ||||| |||||   || |||||||| || |||||||||| ||    
T  12434963 gttgtgttctcagaaaactatgcatcttcaacatggtgtttgaatgaactcgttgaaataatgaagtgc---aaaaaaaatgacgaagacaacgttgttg 12434867  T
Q  170 ttattcctgtgttctacc 187  Q
    ||||||||||||||||||    
T  12434866 ttattcctgtgttctacc 12434849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 32632656 - 32632781
Alignment:
Q  22 gtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaatgaacttg 121  Q
    |||||| ||||||||  |||||||||||||||||| ||| | ||| | || ||||||||  |||||||||| |||||||||| ||||||||| ||||| |    
T  32632656 gtttgggcagaacttacgaaagcaatcaaacaatccactatctttttggtagtgttctcgaagaactatgcgtcttcaacatggtgtttgaacgaactcg 32632755  T
Q  122 ttgaactaatggagtgccgtaacaaa 147  Q
    ||||| ||||||||||  ||||||||    
T  32632756 ttgaaataatggagtgtagtaacaaa 32632781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 5572781 - 5572853
Alignment:
Q  14 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaa 86  Q
    |||||||||||||| |||||||   ||||||||||||  | || ||| |||||||||| |||||||| |||||    
T  5572781 gagatgaagtttggacagaactcttgaaagcaatcaaggattccactttgtttcttgtcgtgttctcggagaa 5572853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 15625 - 15452
Alignment:
Q  14 gagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaa 113  Q
    ||||||| |||||| |||||||||  ||||||||||||||||| ||||| ||||||||||||||||| |||||||| || |||||||||| |||||||||    
T  15625 gagatgatgtttggtcagaacttgttaaagcaatcaaacaatccactctttttcttgttgtgttctcggagaactacgcgtcttcaacatggtgtttgaa 15526  T
Q  114 tgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacgttggtgttattcctgtgttctacc 187  Q
     ||||| |||||| ||||||||||  |||||||||||||||| |||||||||| |||| |||||||||||||||    
T  15525 cgaactggttgaaataatggagtgtagtaacaaaaatgaagatgacaacgttgttgttgttcctgtgttctacc 15452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 19496108 - 19496002
Alignment:
Q  31 gaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaatgaacttgttgaactaa 130  Q
    ||||||| ||||||||| ||  |||||||||| ||||| || ||||||||||||||||| ||   ||| |  | ||||||| |||||||||||||| |||    
T  19496108 gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattccagttggtgtttggatgaacttgttgaaataa 19496009  T
Q  131 tggagtg 137  Q
    || ||||    
T  19496008 tgaagtg 19496002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 16334755 - 16334795
Alignment:
Q  79 tcagagaactatgcttcttcaacattgtgtttgaatgaact 119  Q
    ||||| |||||||||||||||| || |||||||||||||||    
T  16334755 tcagaaaactatgcttcttcaaaatggtgtttgaatgaact 16334795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 17660989 - 17661045
Alignment:
Q  68 ttgttgtgttctcagagaactatgcttcttcaacattgtgtttgaatgaacttgttg 124  Q
    ||||||| |||||  | ||||||||||| ||||| || |||||||||||||||||||    
T  17660989 ttgttgttttctctaacaactatgcttcctcaactttttgtttgaatgaacttgttg 17661045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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