View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16237_low_3 (Length: 559)
Name: NF16237_low_3
Description: NF16237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16237_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 12507863 - 12508404
Alignment:
| Q |
1 |
cgttaatccaaacacgaatttcatgttctttcaattttacttcttgctaccataataaggagaggcataaccattacaaggggatccacaactattatat |
100 |
Q |
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| T |
12507863 |
cgttaatccaaacacgaatttcatgttcttccaattttacttcttgctaccataataaggagaggcataaccattacaaggggatccacaactattatat |
12507962 |
T |
|
| Q |
101 |
ggagaagcataaccactataaggtgaaccacaatcataaggagaactagagaaagttggaggcacaagaacagaagaagataccttaaacctcttactac |
200 |
Q |
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| T |
12507963 |
ggagaagcataaccactataaggtgaaccacaatcataaggagaactagagaaagttggaggcacaagaacagaagaagataccttaaacctcttactac |
12508062 |
T |
|
| Q |
201 |
ttgaaccttcacaaatatcagaactatcatcatcaatccaccccatgagttgttccaaaaaaccttgatcaccaacattaatattagcattattattaat |
300 |
Q |
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| T |
12508063 |
ttgaaccttcacaaatatcagaactatcatcatcaatccaccccatgagttgttccaaaaaaccttgatcaccaacattaatattagcattattgttaat |
12508162 |
T |
|
| Q |
301 |
ctctcctatatcagatccatcagaatctaaccctagattctgaaatccaaaccattcagagctacaatcagaaaccctagaagggtcaccatcattagag |
400 |
Q |
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| T |
12508163 |
ctctcctatatcagatccatcagaatctaaccctagattctgaaatccaaaccattcagagctacaatcagaaaccctagaagggtcaccatcattagag |
12508262 |
T |
|
| Q |
401 |
ggaacaatgatactaggctgcacaactttctcaatgttcttcatatccaaagcagatatttgattgtaattatgattcctacgattgaatatgctagcaa |
500 |
Q |
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| T |
12508263 |
ggaacaatgatactaggctgcacaactttctctatgttcttcatatccaaagcagatatttgattgtaattatgattcctacggttgaatatgctagcaa |
12508362 |
T |
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| Q |
501 |
aagtaaaatgatcactcactctactctttgaaaacttgttgt |
542 |
Q |
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| T |
12508363 |
aagtaaaatgatcactcactctactctttgaaaacttgttgt |
12508404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 135 - 383
Target Start/End: Original strand, 21279361 - 21279607
Alignment:
| Q |
135 |
cataaggagaactagagaaagttggaggcacaagaacagaagaagataccttaaacctcttactacttgaaccttcacaaatatcagaactatcatcatc |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
21279361 |
cataaggagaactagagaaagttggaggcacaagaacagaagaagataccttaaaccttttactacttgaaccttcacaaatatcagaact---atcatc |
21279457 |
T |
|
| Q |
235 |
aatccaccccatgagttgttcc-aaaaaaccttgatcaccaacattaatattagcattattattaatctctcctatatcagatccatcagaatctaaccc |
333 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |
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| T |
21279458 |
aatccatcccatgagttgttccaaaaaaaccttgatcaccaacattaatattagcattaatattaatctctcctatatcacatccatcataatctaaccc |
21279557 |
T |
|
| Q |
334 |
tagattctgaaatccaaaccattcagagctacaatcagaaaccctagaag |
383 |
Q |
| |
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| ||| ||| |||||||||||||||| |||||||||||||| ||||||| |
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| T |
21279558 |
tttattatgatatccaaaccattcagaactacaatcagaaacactagaag |
21279607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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