View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16237_low_5 (Length: 533)

Name: NF16237_low_5
Description: NF16237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16237_low_5
NF16237_low_5
[»] chr6 (22 HSPs)
chr6 (4-517)||(7913394-7913909)
chr6 (388-513)||(7601330-7601456)
chr6 (389-513)||(6331591-6331716)
chr6 (389-513)||(14003852-14003977)
chr6 (389-513)||(16722264-16722389)
chr6 (392-513)||(9236011-9236134)
chr6 (407-511)||(13144470-13144574)
chr6 (389-511)||(6346856-6346979)
chr6 (393-491)||(2668472-2668570)
chr6 (389-513)||(2671034-2671159)
chr6 (421-507)||(2567452-2567539)
chr6 (394-467)||(13144578-13144651)
chr6 (389-513)||(13141264-13141386)
chr6 (410-513)||(6331457-6331561)
chr6 (433-491)||(9974565-9974623)
chr6 (406-473)||(5673539-5673610)
chr6 (402-440)||(12591825-12591863)
chr6 (409-454)||(11936824-11936868)
chr6 (409-454)||(15361714-15361758)
chr6 (409-454)||(16734804-16734848)
chr6 (402-454)||(14669403-14669454)
chr6 (402-454)||(17719780-17719831)
[»] chr4 (9 HSPs)
chr4 (389-513)||(54186508-54186632)
chr4 (388-513)||(8573158-8573284)
chr4 (388-513)||(8575277-8575403)
chr4 (389-513)||(28461068-28461193)
chr4 (389-513)||(2549239-2549364)
chr4 (401-474)||(29422562-29422635)
chr4 (429-511)||(17525284-17525367)
chr4 (402-440)||(47066104-47066142)
chr4 (402-454)||(1685009-1685060)
[»] chr5 (20 HSPs)
chr5 (389-513)||(30655172-30655297)
chr5 (389-513)||(15160366-15160491)
chr5 (389-513)||(19615028-19615153)
chr5 (392-511)||(14416663-14416783)
chr5 (387-504)||(4376565-4376683)
chr5 (401-491)||(17012351-17012441)
chr5 (405-513)||(1503503-1503612)
chr5 (401-491)||(11507336-11507425)
chr5 (401-491)||(11514708-11514797)
chr5 (401-491)||(11522109-11522198)
chr5 (401-491)||(11529522-11529611)
chr5 (401-491)||(11536927-11537015)
chr5 (401-491)||(11499949-11500038)
chr5 (401-491)||(11543015-11543103)
chr5 (402-491)||(31068982-31069070)
chr5 (402-505)||(17037535-17037639)
chr5 (409-454)||(5079121-5079165)
chr5 (409-454)||(7410823-7410867)
chr5 (389-454)||(9354446-9354510)
chr5 (403-476)||(18191884-18191956)
[»] chr8 (14 HSPs)
chr8 (391-513)||(19371265-19371388)
chr8 (389-513)||(19341417-19341542)
chr8 (388-511)||(8833475-8833599)
chr8 (402-454)||(5528735-5528786)
chr8 (431-474)||(10564267-10564310)
chr8 (388-454)||(6801887-6801952)
chr8 (390-491)||(29386460-29386562)
chr8 (409-454)||(25638806-25638850)
chr8 (409-454)||(28249132-28249176)
chr8 (389-454)||(29553608-29553672)
chr8 (402-454)||(17634528-17634579)
chr8 (402-454)||(19369967-19370018)
chr8 (402-454)||(19448440-19448491)
chr8 (402-454)||(19532585-19532636)
[»] chr3 (9 HSPs)
chr3 (389-513)||(23358452-23358577)
chr3 (389-513)||(23363273-23363398)
chr3 (389-513)||(28699118-28699243)
chr3 (387-513)||(24993326-24993453)
chr3 (389-513)||(9638976-9639101)
chr3 (447-513)||(36084521-36084588)
chr3 (384-454)||(5498452-5498521)
chr3 (402-440)||(1628017-1628055)
chr3 (402-454)||(13845984-13846035)
[»] chr7 (7 HSPs)
chr7 (394-513)||(28312660-28312780)
chr7 (389-513)||(24731751-24731876)
chr7 (388-505)||(17710578-17710696)
chr7 (409-511)||(3364981-3365085)
chr7 (402-513)||(7711353-7711465)
chr7 (395-511)||(5838503-5838619)
chr7 (402-454)||(10022116-10022167)
[»] chr1 (3 HSPs)
chr1 (387-513)||(20427729-20427856)
chr1 (402-454)||(37097397-37097448)
chr1 (402-454)||(16222770-16222821)
[»] chr2 (11 HSPs)
chr2 (388-513)||(45404703-45404829)
chr2 (389-517)||(24846886-24847015)
chr2 (389-481)||(18814558-18814650)
chr2 (401-491)||(40084412-40084502)
chr2 (389-437)||(32265917-32265965)
chr2 (402-443)||(44920950-44920991)
chr2 (402-440)||(30266995-30267033)
chr2 (409-454)||(31342773-31342817)
chr2 (389-425)||(7732226-7732262)
chr2 (407-505)||(15513664-15513763)
chr2 (401-433)||(40058334-40058366)
[»] scaffold1005 (1 HSPs)
scaffold1005 (401-491)||(639-728)
[»] scaffold0576 (1 HSPs)
scaffold0576 (409-454)||(6698-6742)


Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 4 - 517
Target Start/End: Complemental strand, 7913909 - 7913394
Alignment:
Q  4 atgtcgaagaatatggattggaatgttgctataagaatggaactatttgtagataacaaatcaacaattgattcagccaag-atcacgttagtcatggta 102  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  7913909 atgtcaaagattatggattggaatgttgctataagaatggaactatttgtagataacaaatcaacaattgattcagccaagcatcacgtgagtcatggta 7913810  T
Q  103 ggagcaagcatatagaaacgaaattgaaactcgagaccaagtacattagtagaagttgaaacttgagtaccgcaacatactaatatacaattagctggta 202  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7913809 ggagcaagcatatagaaaagaaattgaaactcgagaccaagtacattagtagaagttgaaacttgagtaccgcaacatactaatatacaattagctggta 7913710  T
Q  203 tactcacaaaacctttgaagaaaatcaagtttgatgacttgaagaaattgatacggatggattaatcatagtcaacatacaacttagttgaattgttagg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |    
T  7913709 tactcacaaaacctttgaagaaaatcaagtttgatgacttgaagaaattgatagggatggattaattatagtcaacatacaacttagttgaattgttatg 7913610  T
Q  303 cagcaatccatattcctttaagnnnnnnngtaatctatattagttgagggacttttatcacaagtaattcatgtgttagtcacaatcactacaacatcta 402  Q
    ||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7913609 cagtaatccatattcctttaagaaaaaaagtaatctatattagttgagggacttttatcacaagtaattcatgtgttagtcacaatcactacaacatgta 7913510  T
Q  403 tgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa-tctgtgttac 501  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||| ||||||||||    
T  7913509 tgagatttagtaacacttcaaaattgtaactaaatcaaaaacaaatgttactctttagatcttgtaacatttgagaaatattaggtaaagtctgtgttac 7913410  T
Q  502 taaatgatttcaataa 517  Q
    ||||||||||||||||    
T  7913409 taaatgatttcaataa 7913394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 388 - 513
Target Start/End: Complemental strand, 7601456 - 7601330
Alignment:
Q  388 tcactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattagg 487  Q
    ||||||| |||| ||| |||||||||||||||| |||||||||| |||||||||||||| ||||||| ||||||||||||||||||| |||||| |||||    
T  7601456 tcactactacatatataagatttagtaacacttcaaaattgtaattaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttagg 7601357  T
Q  488 taaa-tctgtgttactaaatgatttca 513  Q
    |||| || |||||||||||||||||||    
T  7601356 taaagtccgtgttactaaatgatttca 7601330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 389 - 513
Target Start/End: Complemental strand, 6331716 - 6331591
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||| ||| |||||||||| |||||||| | |||||||||||    
T  6331716 cactacaacatatatgagatttagtaacactttaaagttgtaactaaataaaaaacaaatgtcactatttagatcttataacatttgagaaatattaggt 6331617  T
Q  489 -aaatctgtgttactaaatgatttca 513  Q
     ||| ||||||||| |||||||||||    
T  6331616 aaaacctgtgttacaaaatgatttca 6331591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 389 - 513
Target Start/End: Original strand, 14003852 - 14003977
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    |||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||||||    
T  14003852 cactactacatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggt 14003951  T
Q  489 aaa-tctgtgttactaaatgatttca 513  Q
    |||  | |||||||||||||||||||    
T  14003952 aaagcccgtgttactaaatgatttca 14003977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 389 - 513
Target Start/End: Complemental strand, 16722389 - 16722264
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    |||||| |||| ||| |||||||||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||||||| |||||||||||||    
T  16722389 cactactacatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaaccgttactatttagatcttgtaacatttgacaaatattaggt 16722290  T
Q  489 -aaatctgtgttactaaatgatttca 513  Q
     ||| | |||||||||||||||||||    
T  16722289 aaaacccgtgttactaaatgatttca 16722264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 392 - 513
Target Start/End: Original strand, 9236011 - 9236134
Alignment:
Q  392 tacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt--a 489  Q
    |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||| || ||||||||||| |||||| ||||||  |    
T  9236011 tacaacatatatgagatttagtaacacttcaaaatcgtaactaaatcaaaaacaaatattactatttaaattttgtaacatttgacaaatgttaggtaaa 9236110  T
Q  490 aatctgtgttactaaatgatttca 513  Q
    || | |||||||||||||||||||    
T  9236111 aacccgtgttactaaatgatttca 9236134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 407 - 511
Target Start/End: Complemental strand, 13144574 - 13144470
Alignment:
Q  407 atttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaatctgtgttactaaat 506  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||| ||||||||| | ||||||||||||    
T  13144574 atttagtaacacttcaaaattgtaactaaatcaaaaacaaatattactatttaggtcttgtaacatttgacaaatgttaggtaaagccgtgttactaaat 13144475  T
Q  507 gattt 511  Q
     ||||    
T  13144474 aattt 13144470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 389 - 511
Target Start/End: Complemental strand, 6346979 - 6346856
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    |||| |||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| || ||||||||||| | |||| ||||||    
T  6346979 cactgcaacatatatgagatttagtaacacattaaaattgtaactaaatcaaaaataaatgttactatttaaattttgtaacatttgataaatgttaggt 6346880  T
Q  489 aaa-tctgtgttactaaatgattt 511  Q
    |||  || ||||||||||||||||    
T  6346879 aaagcctatgttactaaatgattt 6346856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 393 - 491
Target Start/End: Complemental strand, 2668570 - 2668472
Alignment:
Q  393 acaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa 491  Q
    ||||||| |||  ||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||||    
T  2668570 acaacatatatatgatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggtaaa 2668472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 389 - 513
Target Start/End: Original strand, 2671034 - 2671159
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    ||||||||||| ||||||||||| ||||| ||  ||| ||||||||||| |||||||||||||||| |||||||||| ||| |||| |||||| ||||||    
T  2671034 cactacaacatatatgagatttaataacatttctaaactgtaactaaattaaaaacaaatgttactatttagatcttataatatttgacaaatgttaggt 2671133  T
Q  489 aaa-tctgtgttactaaatgatttca 513  Q
    |||  | |||||||||||||||||||    
T  2671134 aaagcccgtgttactaaatgatttca 2671159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 421 - 507
Target Start/End: Original strand, 2567452 - 2567539
Alignment:
Q  421 taaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa-tctgtgttactaaatg 507  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| || |||||| || |||||||||||||    
T  2567452 taaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacatttgataaatgtttggtaaagtccgtgttactaaatg 2567539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 394 - 467
Target Start/End: Complemental strand, 13144651 - 13144578
Alignment:
Q  394 caacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgt 467  Q
    |||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||| ||||||    
T  13144651 caacatatatgagatttagtaacacttcaacattgtaactaaatcaaaaacaaatgttactatttaggtcttgt 13144578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 389 - 513
Target Start/End: Original strand, 13141264 - 13141386
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    ||||||||||| ||||| |||| ||||||||| ||| |||||||||||| ||||| |||||||||| ||||||||| ||||||||| | |||| ||||||    
T  13141264 cactacaacatatatgaaattttgtaacacttcaaagttgtaactaaat-aaaaaaaaatgttactatttagatctcgtaacatttgataaatgttaggt 13141362  T
Q  489 aaatctgtgttactaaatgatttca 513  Q
     |  | |||||||||||||||||||    
T  13141363 -agcccgtgttactaaatgatttca 13141386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 410 - 513
Target Start/End: Complemental strand, 6331561 - 6331457
Alignment:
Q  410 tagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaat-ctgtgttactaaatga 508  Q
    |||||| |||| |||| ||||||||||| |||||||||||||||| ||||||| ||||||||| | |||| | |||||||||| | |||||||| |||||    
T  6331561 tagtaatacttcaaaagtgtaactaaataaaaaacaaatgttactatttagattttgtaacatatgacaattgttaggtaaatcccgtgttacttaatga 6331462  T
Q  509 tttca 513  Q
    |||||    
T  6331461 tttca 6331457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 433 - 491
Target Start/End: Complemental strand, 9974623 - 9974565
Alignment:
Q  433 taaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa 491  Q
    |||||||||||||||| ||||| ||||||||||||| ||||| |||||| |||||||||    
T  9974623 taaatcaaaaacaaatattactatttagatcttgtatcatttgacaaatgttaggtaaa 9974565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 473
Target Start/End: Complemental strand, 5673610 - 5673539
Alignment:
Q  406 gatttagtaacactttaaaattgtaact----aaatcaaaaacaaatgttactttttagatcttgtaacatt 473  Q
    |||||||||||| |||||||||||||||    |||| |||||||||| ||||| ||||||| ||||||||||    
T  5673610 gatttagtaacagtttaaaattgtaactaaataaataaaaaacaaattttactatttagattttgtaacatt 5673539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 440
Target Start/End: Original strand, 12591825 - 12591863
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaa 440  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  12591825 atgacatttagtaacacttgaaaattgtaactaaatcaa 12591863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 454
Target Start/End: Complemental strand, 11936868 - 11936824
Alignment:
Q  409 ttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||    
T  11936868 ttagtaacacttgaaaattgtaactaaatcaagaa-aaatgttact 11936824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 15361714 - 15361758
Alignment:
Q  409 ttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||    
T  15361714 ttagtaacacttaaaaattgtaactaaatcaagaa-aaatgttact 15361758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 16734804 - 16734848
Alignment:
Q  409 ttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||    
T  16734804 ttagtaacacttgaaaattgtaactaaatcaagaa-aaatgttact 16734848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 14669454 - 14669403
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||| |||||| ||||||| ||||||||||||||||||| || ||||||||||    
T  14669454 atgacatttagcaacacttgaaaattgtaactaaatcaagaa-aaatgttact 14669403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 17719831 - 17719780
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||| |||||| ||||||| ||||||||||||||||||| || ||||||||||    
T  17719831 atgacatttagcaacacttgaaaattgtaactaaatcaagaa-aaatgttact 17719780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 389 - 513
Target Start/End: Original strand, 54186508 - 54186632
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    |||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||||||    
T  54186508 cactactacatatataagatttagtaacactttaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggt 54186607  T
Q  489 aaatctgtgttactaaatgatttca 513  Q
    ||| | |||||||||||||||||||    
T  54186608 aaagccgtgttactaaatgatttca 54186632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 388 - 513
Target Start/End: Complemental strand, 8573284 - 8573158
Alignment:
Q  388 tcactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattagg 487  Q
    ||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |||||    
T  8573284 tcactactacatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttagg 8573185  T
Q  488 taaa-tctgtgttactaaatgatttca 513  Q
    ||||  | |||||||||||||||||||    
T  8573184 taaagcccgtgttactaaatgatttca 8573158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 388 - 513
Target Start/End: Complemental strand, 8575403 - 8575277
Alignment:
Q  388 tcactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattagg 487  Q
    ||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |||||    
T  8575403 tcactactacatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttagg 8575304  T
Q  488 taaa-tctgtgttactaaatgatttca 513  Q
    ||||  | |||||||||||||||||||    
T  8575303 taaagcccgtgttactaaatgatttca 8575277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 389 - 513
Target Start/End: Original strand, 28461068 - 28461193
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    |||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| | ||||    
T  28461068 cactactacatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgtcaggt 28461167  T
Q  489 aaa-tctgtgttactaaatgatttca 513  Q
    ||| || |||||||||||||||||||    
T  28461168 aaagtccgtgttactaaatgatttca 28461193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 389 - 513
Target Start/End: Original strand, 2549239 - 2549364
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    ||||||||||| ||||||||||||||||||||  ||||||||| |||||||||||||||||||||| |||| ||||||||| |||| |||||| ||||||    
T  2549239 cactacaacatatatgagatttagtaacacttctaaattgtaattaaatcaaaaacaaatgttactatttaaatcttgtaatatttgacaaatgttaggt 2549338  T
Q  489 -aaatctgtgttactaaatgatttca 513  Q
     ||| | |||||||||||||||||||    
T  2549339 aaaacccgtgttactaaatgatttca 2549364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 401 - 474
Target Start/End: Complemental strand, 29422635 - 29422562
Alignment:
Q  401 tatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacattt 474  Q
    ||||||||| ||||||| ||||||| ||| ||||||| ||||| |||||||||||||||||||| |||||||||    
T  29422635 tatgagattcagtaacattttaaaagtgttactaaataaaaaaaaaatgttactttttagatctagtaacattt 29422562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 429 - 511
Target Start/End: Complemental strand, 17525367 - 17525284
Alignment:
Q  429 taactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa-tctgtgttactaaatgattt 511  Q
    |||||||||||||||||||||||||| ||||||||||||||||||  | |||| |||| |||| || |||||||||||| ||||    
T  17525367 taactaaatcaaaaacaaatgttactatttagatcttgtaacattggataaatgttagataaactccgtgttactaaattattt 17525284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 440
Target Start/End: Complemental strand, 47066142 - 47066104
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaa 440  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  47066142 atgacatttagtaacacttgaaaattgtaactaaatcaa 47066104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 1685060 - 1685009
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||| |||||| ||||||| ||||||||||||||||||| || ||||||||||    
T  1685060 atgacatttagcaacacttgaaaattgtaactaaatcaagaa-aaatgttact 1685009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 7e-41; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 389 - 513
Target Start/End: Complemental strand, 30655297 - 30655172
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| ||||||    
T  30655297 cactacaacatatatgagatttagtaacacttcaaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacatttgataaatgttaggt 30655198  T
Q  489 aaa-tctgtgttactaaatgatttca 513  Q
    |||  | |||||||||||||||||||    
T  30655197 aaagccggtgttactaaatgatttca 30655172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 389 - 513
Target Start/End: Original strand, 15160366 - 15160491
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    ||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| |||||||||||||| | |||| ||||||    
T  15160366 cactacaacatatatgagatttagtaacacttcaaaattgtaaataaatcaaaaacaaatgttactatttaaatcttgtaacatttgataaatgttaggt 15160465  T
Q  489 aaa-tctgtgttactaaatgatttca 513  Q
    |||  |  ||||||||||||||||||    
T  15160466 aaagcccatgttactaaatgatttca 15160491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 389 - 513
Target Start/End: Complemental strand, 19615153 - 19615028
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    |||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||||||    
T  19615153 cactactacatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggt 19615054  T
Q  489 aaa-tctgtgttactaaatgatttca 513  Q
    |||  |  ||||||||||||||||||    
T  19615053 aaagcccatgttactaaatgatttca 19615028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 392 - 511
Target Start/End: Original strand, 14416663 - 14416783
Alignment:
Q  392 tacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa 491  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||| |||| | |||| |||||||||    
T  14416663 tacaacatatatgagatttagtaacactttaaatttgtaactaaatcagaaacaaatgttactatttagatcatgtaatatttgaaaaatgttaggtaaa 14416762  T
Q  492 tct-gtgttactaaatgattt 511  Q
      | |||||||||||||||||    
T  14416763 gatcgtgttactaaatgattt 14416783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 387 - 504
Target Start/End: Original strand, 4376565 - 4376683
Alignment:
Q  387 atcactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattag 486  Q
    |||||||| |||| |||||||||| ||||||||| |||| |||||||||||||||| ||||||||||| ||||||||||||||||||| | |||| ||||    
T  4376565 atcactactacatatatgagattttgtaacacttgaaaaatgtaactaaatcaaaaccaaatgttactatttagatcttgtaacatttgataaatgttag 4376664  T
Q  487 gtaaa-tctgtgttactaa 504  Q
    ||||| || ||||||||||    
T  4376665 gtaaagtccgtgttactaa 4376683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 401 - 491
Target Start/End: Original strand, 17012351 - 17012441
Alignment:
Q  401 tatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa 491  Q
    |||||||||||||||||||| ||| |||||| || || ||||| |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  17012351 tatgagatttagtaacacttcaaatttgtaattagataaaaaataaatgttactatttagatcttgtaacatttgacaaatattaggtaaa 17012441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 405 - 513
Target Start/End: Complemental strand, 1503612 - 1503503
Alignment:
Q  405 agatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaatctg-tgttacta 503  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||||||||||| || || | |||||| |||| ||| ||||| ||    
T  1503612 agatttagtaacactttaaaattataaataaatcaaaaataaatgttactatttagatcttgtaacaattgactagtattagataaagctgatgttaata 1503513  T
Q  504 aatgatttca 513  Q
    ||| ||||||    
T  1503512 aataatttca 1503503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 401 - 491
Target Start/End: Original strand, 11507336 - 11507425
Alignment:
Q  401 tatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa 491  Q
    ||||| |||||||||||||| |||||||||||||||| ||||| |||||||||| |||||||| |||||| ||| | |||| |||||||||    
T  11507336 tatgaaatttagtaacacttaaaaattgtaactaaat-aaaaaaaaatgttactatttagatcatgtaacttttgataaatgttaggtaaa 11507425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 401 - 491
Target Start/End: Original strand, 11514708 - 11514797
Alignment:
Q  401 tatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa 491  Q
    ||||| |||||||||||||| |||||||||||||||| ||||| |||||||||| |||||||| |||||| ||| | |||| |||||||||    
T  11514708 tatgaaatttagtaacacttaaaaattgtaactaaat-aaaaaaaaatgttactatttagatcatgtaacttttgataaatgttaggtaaa 11514797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 401 - 491
Target Start/End: Original strand, 11522109 - 11522198
Alignment:
Q  401 tatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa 491  Q
    ||||| |||||||||||||| |||||||||||||||| ||||| |||||||||| |||||||| |||||| ||| | |||| |||||||||    
T  11522109 tatgaaatttagtaacacttaaaaattgtaactaaat-aaaaaaaaatgttactatttagatcatgtaacttttgataaatgttaggtaaa 11522198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 401 - 491
Target Start/End: Original strand, 11529522 - 11529611
Alignment:
Q  401 tatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa 491  Q
    ||||| |||||||||||||| |||||||||||||||| ||||| |||||||||| |||||||| |||||| ||| | |||| |||||||||    
T  11529522 tatgaaatttagtaacacttaaaaattgtaactaaat-aaaaaaaaatgttactatttagatcatgtaacttttgataaatgttaggtaaa 11529611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 401 - 491
Target Start/End: Original strand, 11536927 - 11537015
Alignment:
Q  401 tatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa 491  Q
    ||||| |||||||||||||| ||||||||||||||||  |||| |||||||||| |||||||| |||||| ||| | |||| |||||||||    
T  11536927 tatgaaatttagtaacacttaaaaattgtaactaaat--aaaaaaaatgttactatttagatcatgtaacttttgataaatgttaggtaaa 11537015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 401 - 491
Target Start/End: Original strand, 11499949 - 11500038
Alignment:
Q  401 tatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa 491  Q
    ||||| |||||||||||||| |||||||||||||||| ||||| |||||||||| |||||||| |||||| ||| | |||| | |||||||    
T  11499949 tatgaaatttagtaacacttaaaaattgtaactaaat-aaaaaaaaatgttactatttagatcatgtaacttttgataaatgtcaggtaaa 11500038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 491
Target Start/End: Original strand, 11543015 - 11543103
Alignment:
Q  401 tatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa 491  Q
    ||||| |||||||||||||| ||||||||||||||||  |||| |||||||||| |||||||| |||||| ||| | |||| ||| |||||    
T  11543015 tatgaaatttagtaacacttaaaaattgtaactaaat--aaaaaaaatgttactatttagatcatgtaacttttgataaatgttaagtaaa 11543103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 491
Target Start/End: Complemental strand, 31069070 - 31068982
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa 491  Q
    |||| |||||||||||||| ||||||||||||||||||| || ||||||||||  ||| || | |||||||| ||||| | |||||||||    
T  31069070 atgacatttagtaacacttaaaaattgtaactaaatcaagaa-aaatgttactaattaaatttagtaacattgaacaattgttaggtaaa 31068982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 505
Target Start/End: Original strand, 17037535 - 17037639
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacattt-aacaaatattaggtaaa-tctgtgtt 499  Q
    |||| |||||||||||||| ||||| ||||||||||||| || ||||||||||  ||| || | ||||||||| ||||| | ||||||||| || |||||    
T  17037535 atgacatttagtaacacttgaaaatcgtaactaaatcaagaa-aaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtcagtgtt 17037633  T
Q  500 actaaa 505  Q
    ||||||    
T  17037634 actaaa 17037639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 454
Target Start/End: Complemental strand, 5079165 - 5079121
Alignment:
Q  409 ttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||    
T  5079165 ttagtaacacttgaaaattgtaactaaatcaagaa-aaatgttact 5079121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 7410823 - 7410867
Alignment:
Q  409 ttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    ||||||||| || |||||||||||||||||||||| ||||||||||    
T  7410823 ttagtaacatttcaaaattgtaactaaatcaaaaa-aaatgttact 7410867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 454
Target Start/End: Complemental strand, 9354510 - 9354446
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||||||||||   ||||||||||||||| || |||||||||||| |||||| || ||||||||||    
T  9354510 cactacaacatgattgagatttagtaacaattgaaaattgtaactgaatcaagaa-aaatgttact 9354446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 18191956 - 18191884
Alignment:
Q  403 tgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaa 476  Q
    ||||||||||||||| || |||||||||||||||| || || ||||||||||  ||| || | |||||||||||    
T  18191956 tgagatttagtaacaattgaaaattgtaactaaattaagaa-aaatgttactaattaaatttagtaacatttaa 18191884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 391 - 513
Target Start/End: Complemental strand, 19371388 - 19371265
Alignment:
Q  391 ctacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaa 490  Q
    ||||||||  ||||||||||||||||| || |||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||| ||||||||    
T  19371388 ctacaacagatatgagatttagtaacaattcaaaattgtaactaaatcaaaaataaatgttactatttagatcttgtaacatttgacaaatgttaggtaa 19371289  T
Q  491 a-tctgtgttactaaatgatttca 513  Q
    |  |||||||||||||||||||||    
T  19371288 agactgtgttactaaatgatttca 19371265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 389 - 513
Target Start/End: Complemental strand, 19341542 - 19341417
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    ||||||||||| ||| ||||||||||||| || |||||||||||||||||||||| |||||||||| ||||||||||| ||||||| |||||| ||||||    
T  19341542 cactacaacatatataagatttagtaacaattcaaaattgtaactaaatcaaaaataaatgttactatttagatcttgaaacatttgacaaatgttaggt 19341443  T
Q  489 aaa-tctgtgttactaaatgatttca 513  Q
    |||  | |||||||||||||||||||    
T  19341442 aaagaccgtgttactaaatgatttca 19341417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 388 - 511
Target Start/End: Original strand, 8833475 - 8833599
Alignment:
Q  388 tcactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattagg 487  Q
    ||||||| |||| ||||||||||||||| || | |||| |||||||||||||||| ||||||||||| ||||||||||||||||||| | |||| |||||    
T  8833475 tcactactacatatatgagatttagtaaaacatgaaaaatgtaactaaatcaaaaccaaatgttactatttagatcttgtaacatttgataaatgttagg 8833574  T
Q  488 t-aaatctgtgttactaaatgattt 511  Q
    | || || |||||||||||||||||    
T  8833575 tgaagtccgtgttactaaatgattt 8833599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 454
Target Start/End: Original strand, 5528735 - 5528786
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||| |||||||||||||| ||||||||||||||||||| || ||||||||||    
T  5528735 atgacatttagtaacacttgaaaattgtaactaaatcaagaa-aaatgttact 5528786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 474
Target Start/End: Original strand, 10564267 - 10564310
Alignment:
Q  431 actaaatcaaaaacaaatgttactttttagatcttgtaacattt 474  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||    
T  10564267 actaaatcaaaaacaaatgttactattttgatctagtaacattt 10564310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 6801952 - 6801887
Alignment:
Q  388 tcactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    ||||||||||||  ||||||||||||||||||| |||| | | |||||||||| || ||||||||||    
T  6801952 tcactacaacatagatgagatttagtaacacttgaaaactattactaaatcaataa-aaatgttact 6801887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 491
Target Start/End: Original strand, 29386460 - 29386562
Alignment:
Q  390 actacaacatctatgagatttagtaacactttaaaattgtaactaaat-caaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    ||||||| || ||||||||||||||||| || |||| ||||| |||||  ||||| |||||||||| ||||||| | |||| |||| | ||||  |||||    
T  29386460 actacaaaatatatgagatttagtaacatttaaaaaatgtaagtaaataaaaaaaaaaatgttactatttagatttagtaatatttgataaatggtaggt 29386559  T
Q  489 aaa 491  Q
    |||    
T  29386560 aaa 29386562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 25638806 - 25638850
Alignment:
Q  409 ttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||    
T  25638806 ttagtaacacttgaaaattgtaactaaatcaagaa-aaatgttact 25638850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 454
Target Start/End: Complemental strand, 28249176 - 28249132
Alignment:
Q  409 ttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||    
T  28249176 ttagtaacacttgaaaattgtaactaaatcaagaa-aaatgttact 28249132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 454
Target Start/End: Original strand, 29553608 - 29553672
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||||||||||   ||||||||||||||| || ||||||||||| ||||||| || ||||||||||    
T  29553608 cactacaacatgattgagatttagtaacaattgaaaattgtaaccaaatcaagaa-aaatgttact 29553672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 17634579 - 17634528
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||| ||||||||||| || ||||||||||||||||||| || ||||||||||    
T  17634579 atgacatttagtaacatttgaaaattgtaactaaatcaagaa-aaatgttact 17634528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 19370018 - 19369967
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||| |||||| ||||||| ||||||||||||||||||| || ||||||||||    
T  19370018 atgacatttagcaacacttgaaaattgtaactaaatcaagaa-aaatgttact 19369967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 454
Target Start/End: Original strand, 19448440 - 19448491
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||| |||||| ||||||| ||||||||||||||||||| || ||||||||||    
T  19448440 atgacatttagcaacacttgaaaattgtaactaaatcaagaa-aaatgttact 19448491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 19532636 - 19532585
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||| |||||| ||||||| ||||||||||||||||||| || ||||||||||    
T  19532636 atgacatttagcaacacttgaaaattgtaactaaatcaagaa-aaatgttact 19532585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 389 - 513
Target Start/End: Complemental strand, 23358577 - 23358452
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    |||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||||||    
T  23358577 cactactacatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggt 23358478  T
Q  489 aaa-tctgtgttactaaatgatttca 513  Q
    |||  | |||||||||||||||||||    
T  23358477 aaagcccgtgttactaaatgatttca 23358452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 389 - 513
Target Start/End: Complemental strand, 23363398 - 23363273
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    |||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||||||    
T  23363398 cactactacatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggt 23363299  T
Q  489 aaa-tctgtgttactaaatgatttca 513  Q
    |||  | |||||||||||||||||||    
T  23363298 aaagcccgtgttactaaatgatttca 23363273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 389 - 513
Target Start/End: Complemental strand, 28699243 - 28699118
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    |||||| |||| ||| ||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||||||    
T  28699243 cactactacatatataagatttaataacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttaggt 28699144  T
Q  489 aaa-tctgtgttactaaatgatttca 513  Q
    |||  |||||||||||||||||||||    
T  28699143 aaagcctgtgttactaaatgatttca 28699118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 387 - 513
Target Start/End: Original strand, 24993326 - 24993453
Alignment:
Q  387 atcactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattag 486  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||| |||||| ||||||||||||||||||| | |||| ||||    
T  24993326 atcactacaacatatatgagatttagtaacacttcaaaattgtaactaaataaaaaacaaacgttactatttagatcttgtaacatttgaaaaatgttag 24993425  T
Q  487 gt-aaatctgtgttactaaatgatttca 513  Q
    || ||| |||||||| ||| ||||||||    
T  24993426 gtaaaacctgtgttattaagtgatttca 24993453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 389 - 513
Target Start/End: Original strand, 9638976 - 9639101
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    |||||| |||| ||| |||||||||||||||| |||||||||| |||||||||||||| ||||||| ||||||||||||||||||| |||||| ||| ||    
T  9638976 cactactacatatataagatttagtaacacttcaaaattgtaattaaatcaaaaacaattgttactatttagatcttgtaacatttgacaaatgttatgt 9639075  T
Q  489 aaa-tctgtgttactaaatgatttca 513  Q
    |||  | |||||||||||||||||||    
T  9639076 aaagcccgtgttactaaatgatttca 9639101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 447 - 513
Target Start/End: Original strand, 36084521 - 36084588
Alignment:
Q  447 atgttactttttagatcttgtaacatttaacaaatattaggtaaatc-tgtgttactaaatgatttca 513  Q
    |||||||| ||||||||| ||||||||| |||||| ||||||||| | | ||||||||||||||||||    
T  36084521 atgttactatttagatctcgtaacatttgacaaatgttaggtaaagcctatgttactaaatgatttca 36084588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 454
Target Start/End: Original strand, 5498452 - 5498521
Alignment:
Q  384 acaatcactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    ||||||||||||||||   ||||||||||||||| || |||| |||||||||||||| || ||||||||||    
T  5498452 acaatcactacaacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaa-aaatgttact 5498521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 440
Target Start/End: Complemental strand, 1628055 - 1628017
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaa 440  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  1628055 atgacatttagtaacacttgaaaattgtaactaaatcaa 1628017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 454
Target Start/End: Original strand, 13845984 - 13846035
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||| |||||| ||||||| ||||||||||||||||||| || ||||||||||    
T  13845984 atgacatttagcaacacttgaaaattgtaactaaatcaagaa-aaatgttact 13846035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 394 - 513
Target Start/End: Original strand, 28312660 - 28312780
Alignment:
Q  394 caacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa-t 492  Q
    |||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||      
T  28312660 caacatatatgagatttagtaacaattcaaaattgcaactaaatcaaaaacaaatgttactatttagatcttgtaacatttcacaaatgttaggtaaagc 28312759  T
Q  493 ctgtgttactaaatgatttca 513  Q
    | |||||||||||||||||||    
T  28312760 ccgtgttactaaatgatttca 28312780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 389 - 513
Target Start/End: Complemental strand, 24731876 - 24731751
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    ||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| |||||||||| ||||||||||||||||||| | |||| ||||||    
T  24731876 cactacaacatatatgagatttagtaacacttcaaaattgtaattaaatcaaaaataaatgttactatttagatcttgtaacatttgataaatgttaggt 24731777  T
Q  489 -aaatctgtgttactaaatgatttca 513  Q
     ||| |  ||||||||||||||||||    
T  24731776 aaaacccatgttactaaatgatttca 24731751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 388 - 505
Target Start/End: Original strand, 17710578 - 17710696
Alignment:
Q  388 tcactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattagg 487  Q
    |||||||||||| |||||||||||||||||| | ||||||| || ||||| |||||||||||||||| ||||||||||||||||| | |||||| |||||    
T  17710578 tcactacaacatatatgagatttagtaacacgtcaaaattgcaattaaattaaaaacaaatgttactatttagatcttgtaacatgtgacaaatgttagg 17710677  T
Q  488 taaat-ctgtgttactaaa 505  Q
    ||||| |||||||||||||    
T  17710678 taaatcctgtgttactaaa 17710696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 409 - 511
Target Start/End: Original strand, 3364981 - 3365085
Alignment:
Q  409 ttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa--tctgtgttactaaat 506  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||||   | ||||||||||||    
T  3364981 ttagtaacactttaaaattgtaactaaatcaaaaacaattgttactatttagatcttgtaacatttgacaaatgttaggtaaagcccggtgttactaaat 3365080  T
Q  507 gattt 511  Q
    |||||    
T  3365081 gattt 3365085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 402 - 513
Target Start/End: Complemental strand, 7711465 - 7711353
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa-tctgtgtta 500  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||| |  ||| |||||||||  | ||||||    
T  7711465 atgagatttagtaacacttctaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacatttgatgaatgttaggtaaagcccgtgtta 7711366  T
Q  501 ctaaatgatttca 513  Q
    |||||||||||||    
T  7711365 ctaaatgatttca 7711353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 395 - 511
Target Start/End: Original strand, 5838503 - 5838619
Alignment:
Q  395 aacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaat-c 493  Q
    ||||| ||||||||||||||| |||| |||||| ||||||||| | |||| ||||||||| | || |||||||||||||| | |||| |||||||||| |    
T  5838503 aacatatatgagatttagtaatacttgaaaattttaactaaataataaac-aatgttactatataaatcttgtaacatttgataaatgttaggtaaatcc 5838601  T
Q  494 tgtgttactaaatgattt 511  Q
     || ||||||||||||||    
T  5838602 cgtcttactaaatgattt 5838619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 454
Target Start/End: Original strand, 10022116 - 10022167
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||| ||||||||||| || |||||||||||||||||| ||| ||||||||||    
T  10022116 atgacatttagtaacaattgaaaattgtaactaaatcagaaa-aaatgttact 10022167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 387 - 513
Target Start/End: Complemental strand, 20427856 - 20427729
Alignment:
Q  387 atcactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattag 486  Q
    ||||||||||||  ||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| ||||    
T  20427856 atcactacaacacatatgagatttagtaacaattcaaaattgtaactaaatcaaaaacaaatgttactatttagatcttgtaacttttgacaaatgttag 20427757  T
Q  487 gt-aaatctgtgttactaaatgatttca 513  Q
    || ||| | |||||||||||| ||||||    
T  20427756 gtaaaacccgtgttactaaataatttca 20427729  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 37097448 - 37097397
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||| |||||||||||||| ||||||||||||||||||| || ||||||||||    
T  37097448 atgacatttagtaacacttgaaaattgtaactaaatcaagaa-aaatgttact 37097397  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 454
Target Start/End: Original strand, 16222770 - 16222821
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||| ||||||||||| || ||||||||||||||||||| || ||||||||||    
T  16222770 atgacatttagtaacatttgaaaattgtaactaaatcaagaa-aaatgttact 16222821  T

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Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 388 - 513
Target Start/End: Complemental strand, 45404829 - 45404703
Alignment:
Q  388 tcactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattagg 487  Q
    ||||||| | || ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |||||    
T  45404829 tcactactaaatatataagatttagtaacacttcaaaattgtaactaaatcaaaaacaactgttactatttagatcttgtaacatttgacaaatgttagg 45404730  T
Q  488 taaa-tctgtgttactaaatgatttca 513  Q
    ||||  | |||||||||||||||||||    
T  45404729 taaagcccgtgttactaaatgatttca 45404703  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 389 - 517
Target Start/End: Complemental strand, 24847015 - 24846886
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggt 488  Q
    |||||||||||  ||||||||| |||||| || ||||||||||||||||||||||||||||||||| |||| |||||  ||||||| |||||| ||||||    
T  24847015 cactacaacatacatgagattttgtaacatttcaaaattgtaactaaatcaaaaacaaatgttactatttatatcttacaacatttgacaaatgttaggt 24846916  T
Q  489 aaat-ctgtgttactaaatgatttcaataa 517  Q
    |||| | |||||||||||||||||||||||    
T  24846915 aaatcccgtgttactaaatgatttcaataa 24846886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 389 - 481
Target Start/End: Original strand, 18814558 - 18814650
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaat 481  Q
    ||||||| ||| |||||||||| |||||||||  ||||||||||| |||||||||| ||||||||| ||||||||||||||||||| ||||||    
T  18814558 cactacaccatatatgagatttggtaacacttataaattgtaactgaatcaaaaactaatgttactatttagatcttgtaacatttgacaaat 18814650  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 401 - 491
Target Start/End: Complemental strand, 40084502 - 40084412
Alignment:
Q  401 tatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa 491  Q
    |||||||||||||||||||| |||| | ||||||||| ||||| |  ||||| | ||||| ||||||||||||| | ||||||||||||||    
T  40084502 tatgagatttagtaacacttaaaaaatataactaaataaaaaataggtgttattatttagttcttgtaacatttgataaatattaggtaaa 40084412  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 437
Target Start/End: Original strand, 32265917 - 32265965
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaattgtaactaaat 437  Q
    ||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  32265917 cactacaacatatatgagatttagtaacagttcaaaattgtaactaaat 32265965  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 443
Target Start/End: Original strand, 44920950 - 44920991
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaaaaa 443  Q
    |||| |||||||||||||| ||||||||||||||||||||||    
T  44920950 atgacatttagtaacacttgaaaattgtaactaaatcaaaaa 44920991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 440
Target Start/End: Original strand, 30266995 - 30267033
Alignment:
Q  402 atgagatttagtaacactttaaaattgtaactaaatcaa 440  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  30266995 atgacatttagtaacacttgaaaattgtaactaaatcaa 30267033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 454
Target Start/End: Complemental strand, 31342817 - 31342773
Alignment:
Q  409 ttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||    
T  31342817 ttagtaacacttgaaaattgtaactaaatcaagaa-aaatgttact 31342773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 7732226 - 7732262
Alignment:
Q  389 cactacaacatctatgagatttagtaacactttaaaa 425  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  7732226 cactacaacatatatgagatttagtaacacttgaaaa 7732262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 505
Target Start/End: Original strand, 15513664 - 15513763
Alignment:
Q  407 atttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaaca-tttaacaaatattaggtaaatct-gtgttactaa 504  Q
    ||||||||||| || |||||||||| |||||||| || ||||||||||  ||| || |||||||| || ||||| | ||||||||| || ||||||||||    
T  15513664 atttagtaacaattaaaaattgtaagtaaatcaagaa-aaatgttactagttaaattttgtaacacttgaacaattgttaggtaaagctcgtgttactaa 15513762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 433
Target Start/End: Complemental strand, 40058366 - 40058334
Alignment:
Q  401 tatgagatttagtaacactttaaaattgtaact 433  Q
    |||||||||||||||||||| ||||||||||||    
T  40058366 tatgagatttagtaacacttgaaaattgtaact 40058334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1005 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 401 - 491
Target Start/End: Original strand, 639 - 728
Alignment:
Q  401 tatgagatttagtaacactttaaaattgtaactaaatcaaaaacaaatgttactttttagatcttgtaacatttaacaaatattaggtaaa 491  Q
    ||||| |||||||||||||| |||||||||||||||| ||||| |||||||||| |||||||| |||||| ||| | |||| |||||||||    
T  639 tatgaaatttagtaacacttaaaaattgtaactaaat-aaaaaaaaatgttactatttagatcatgtaacttttgataaatgttaggtaaa 728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 6698 - 6742
Alignment:
Q  409 ttagtaacactttaaaattgtaactaaatcaaaaacaaatgttact 454  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||    
T  6698 ttagtaacacttaaaaattgtaactaaatcaagaa-aaatgttact 6742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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