View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16237_low_6 (Length: 503)

Name: NF16237_low_6
Description: NF16237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16237_low_6
NF16237_low_6
[»] chr3 (12 HSPs)
chr3 (359-503)||(18470561-18470707)
chr3 (359-503)||(23662739-23662885)
chr3 (359-503)||(3686733-3686879)
chr3 (359-503)||(8886556-8886702)
chr3 (255-309)||(3686595-3686649)
chr3 (353-503)||(12967146-12967297)
chr3 (267-309)||(18470435-18470477)
chr3 (255-309)||(23662952-23663006)
chr3 (267-309)||(38206144-38206186)
chr3 (267-309)||(24756019-24756061)
chr3 (267-309)||(24765016-24765058)
chr3 (267-309)||(8886447-8886489)
[»] chr8 (14 HSPs)
chr8 (359-503)||(17023581-17023725)
chr8 (359-503)||(17554074-17554218)
chr8 (369-503)||(38183929-38184064)
chr8 (362-503)||(40127199-40127342)
chr8 (369-503)||(4239646-4239782)
chr8 (369-503)||(23083201-23083337)
chr8 (255-309)||(40127429-40127483)
chr8 (255-309)||(4239864-4239918)
chr8 (255-309)||(23083419-23083473)
chr8 (267-309)||(38184128-38184170)
chr8 (369-503)||(34116990-34117125)
chr8 (267-309)||(17023455-17023497)
chr8 (267-309)||(17553948-17553990)
chr8 (267-309)||(25369270-25369312)
[»] chr4 (11 HSPs)
chr4 (359-503)||(19105362-19105506)
chr4 (318-503)||(33465647-33465833)
chr4 (359-503)||(31272100-31272248)
chr4 (319-484)||(32222509-32222675)
chr4 (359-503)||(37261185-37261331)
chr4 (267-309)||(33465888-33465930)
chr4 (255-309)||(37261398-37261452)
chr4 (319-457)||(15134741-15134879)
chr4 (255-309)||(31271979-31272033)
chr4 (267-309)||(39318873-39318915)
chr4 (267-309)||(12877548-12877590)
[»] chr5 (15 HSPs)
chr5 (359-503)||(36426988-36427134)
chr5 (359-503)||(39521774-39521920)
chr5 (359-503)||(26670625-26670771)
chr5 (359-503)||(26942222-26942368)
chr5 (359-503)||(560096-560242)
chr5 (356-503)||(9911947-9912095)
chr5 (359-503)||(36938818-36938964)
chr5 (359-503)||(42000052-42000196)
chr5 (255-309)||(559975-560029)
chr5 (255-309)||(36939048-36939102)
chr5 (255-309)||(39521636-39521690)
chr5 (267-309)||(26670499-26670541)
chr5 (267-309)||(26942096-26942138)
chr5 (255-309)||(36426850-36426904)
chr5 (267-309)||(41999926-41999968)
[»] chr2 (12 HSPs)
chr2 (359-503)||(30649536-30649682)
chr2 (267-457)||(25480218-25480414)
chr2 (267-457)||(25487824-25488020)
chr2 (359-503)||(30654218-30654364)
chr2 (369-503)||(17971991-17972127)
chr2 (255-309)||(17972209-17972263)
chr2 (255-309)||(30649398-30649452)
chr2 (255-309)||(30654097-30654151)
chr2 (255-309)||(9182254-9182308)
chr2 (359-503)||(9182043-9182188)
chr2 (272-309)||(30616168-30616205)
chr2 (309-457)||(28450512-28450660)
[»] chr1 (8 HSPs)
chr1 (359-484)||(10138646-10138772)
chr1 (359-484)||(25853737-25853864)
chr1 (255-309)||(10138508-10138562)
chr1 (359-503)||(47453487-47453632)
chr1 (270-309)||(16750252-16750291)
chr1 (359-409)||(16750158-16750208)
chr1 (267-309)||(25853626-25853668)
chr1 (255-309)||(47453720-47453774)
[»] scaffold0045 (2 HSPs)
scaffold0045 (402-503)||(81710-81812)
scaffold0045 (267-309)||(81573-81615)
[»] chr7 (2 HSPs)
chr7 (357-457)||(21667913-21668012)
chr7 (267-309)||(21667780-21667822)
[»] chr6 (2 HSPs)
chr6 (359-422)||(16836227-16836291)
chr6 (267-309)||(12796301-12796343)
[»] scaffold0070 (2 HSPs)
scaffold0070 (267-309)||(66013-66055)
scaffold0070 (267-309)||(61811-61853)


Alignment Details
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 359 - 503
Target Start/End: Original strand, 18470561 - 18470707
Alignment:
Q  359 ccactagtgtccccactattctttagttaaaggggtaaatat--tttcatagatatcggcatcttttataactattgtcactttagcatttaggtcataa 456  Q
    ||||||||| ||||||||||||||||||||||||||||||||  ||||||||| |||| |||||||||   ||||  |||||||||||||||||||||||    
T  18470561 ccactagtgcccccactattctttagttaaaggggtaaatatattttcatagaaatcgccatcttttaattctatgatcactttagcatttaggtcataa 18470660  T
Q  457 acctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    ||||||||| |||| ||||||||||||| ||||| ||||||||||||    
T  18470661 acctatatgcttcgctgtttatagcatacctaatgaatacacattca 18470707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 359 - 503
Target Start/End: Complemental strand, 23662885 - 23662739
Alignment:
Q  359 ccactagtgtccccactattctttagtt-aaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcat-aa 456  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| |||||| ||| || |||||||   ||||  |||||||| |||||||||||| ||    
T  23662885 ccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatcagcgtcttttaattctatgatcactttaacatttaggtcataaa 23662786  T
Q  457 acctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    |||||||||||||| | ||||||||||| | ||| |||| |||||||    
T  23662785 acctatatgtttcgctatttatagcatacccaatgaatatacattca 23662739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 359 - 503
Target Start/End: Original strand, 3686733 - 3686879
Alignment:
Q  359 ccactagtgtccccactattctttagtta-aaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcataaa 457  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||| |||||| |||||| |||||||   ||||  |||||||| |||||||||||||||    
T  3686733 ccactagtgcccccactattctttagtttcaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaa 3686832  T
Q  458 -cctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
     ||||||||||| | | ||||||||||| | ||| |||| |||||||    
T  3686833 gcctatatgttttgctatttatagcatacccaatgaatatacattca 3686879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 503
Target Start/End: Original strand, 8886556 - 8886702
Alignment:
Q  359 ccactagtgtccccactattctttagtta-aaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcat-aa 456  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||| |||||| |||||| |||||||   ||||  |||||||| |||||||||||| ||    
T  8886556 ccactagtgcccccactattctttagtttcaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaa 8886655  T
Q  457 acctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    |||||||||||| | | |||||| |||| | ||| |||| |||||||    
T  8886656 acctatatgttttgctatttataacatacccaatgaatatacattca 8886702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 3686595 - 3686649
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  3686595 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 3686649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 353 - 503
Target Start/End: Complemental strand, 12967297 - 12967146
Alignment:
Q  353 gcgcctccactagtgtccccactattctttagttaaaggggtaaatattttcatagatatcggcatc-ttttataactattgtcactttagcatttaggt 451  Q
    ||||| ||||||||  ||||||||||||||| ||||| ||||||||||||  ||||| |||  |||| ||||||  ||||  ||||||||||||||||||    
T  12967297 gcgcccccactagttcccccactattctttatttaaatgggtaaatatttatatagaaatcaacatcgttttat-tctatgatcactttagcatttaggt 12967199  T
Q  452 cat-aaacctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    ||| ||||||||||| ||   | |||||| |||| | ||| ||||||||||||    
T  12967198 cataaaacctatatgattttctatttataacatacccaatgaatacacattca 12967146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 18470435 - 18470477
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  18470435 tctataacatctggtacgatgttttcataactatttctgatta 18470477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 23663006 - 23662952
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    |||| |||||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  23663006 cctcatcaaggttctataacatctagtacgatgttttcataactatttttgatta 23662952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 38206186 - 38206144
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  38206186 tctataacatcttgtacgatgttttcataactatttctgatta 38206144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 24756061 - 24756019
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  24756061 tctataacatcacgtatgatgttttcataactatttctgatta 24756019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 24765058 - 24765016
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  24765058 tctataacatcacgtatgatgttttcataactatttctgatta 24765016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 8886447 - 8886489
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    |||||||||||| |||| |||||||||||||||||| ||||||    
T  8886447 tctataacatctggtacaatgttttcataactatttatgatta 8886489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 359 - 503
Target Start/End: Original strand, 17023581 - 17023725
Alignment:
Q  359 ccactagtgtccccactattctttagttaaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcataaac 458  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    |||  |||||||| ||||||||||||||||    
T  17023581 ccactagcgcccccactattctttagttaaaggggtaaatattttcatagaaatcagcatcttttaattttatgatcactttaacatttaggtcataaac 17023680  T
Q  459 ctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    ||||||| |||| ||||||| ||||| ||||| ||||||||||||    
T  17023681 ctatatgcttcgctgtttattgcatacctaatgaatacacattca 17023725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 359 - 503
Target Start/End: Original strand, 17554074 - 17554218
Alignment:
Q  359 ccactagtgtccccactattctttagttaaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcataaac 458  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    |||  |||||||| ||||||||||||||||    
T  17554074 ccactagcgcccccactattctttagttaaaggggtaaatattttcatagaaatcagcatcttttaattttatgatcactttaacatttaggtcataaac 17554173  T
Q  459 ctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    ||||||| |||| ||||||| ||||| ||||| ||||||||||||    
T  17554174 ctatatgcttcgctgtttattgcatacctaatgaatacacattca 17554218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 369 - 503
Target Start/End: Complemental strand, 38184064 - 38183929
Alignment:
Q  369 ccccactattctttagttaaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcat-aaacctatatgtt 467  Q
    |||||||||||||||||||||| ||||||||||| |||||| |||| |||||||||   ||||  ||||||||||||||||||||| |||||||||| ||    
T  38184064 ccccactattctttagttaaagaggtaaatatttacatagaaatcgacatcttttaattctatgatcactttagcatttaggtcataaaacctatatatt 38183965  T
Q  468 tcgttgtttatagcatatctaattaatacacattca 503  Q
    ||  | ||||||||||| | ||| ||||||||||||    
T  38183964 tccctatttatagcatacccaatgaatacacattca 38183929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 362 - 503
Target Start/End: Complemental strand, 40127342 - 40127199
Alignment:
Q  362 ctagtgtccccactattctttagtt-aaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcat-aaacc 459  Q
    |||||| |||||||||||||||||| |||||||||||||||| ||| || |||||| |||||||   ||||  |||||||| |||||||||||| |||||    
T  40127342 ctagtgcccccactattctttagtttaaaggggtaaatatttacattgaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaacc 40127243  T
Q  460 tatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    ||||||||| | | ||||||||||| | ||| |||| |||||||    
T  40127242 tatatgttttgctatttatagcatacccaatgaatatacattca 40127199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 369 - 503
Target Start/End: Complemental strand, 4239782 - 4239646
Alignment:
Q  369 ccccactattctttagtta-aaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcataaa-cctatatgt 466  Q
    ||||||||||||||||||  ||||||||||||||| |||||| |||||| |||||||   ||||  |||||||| ||||||||||||||| |||||||||    
T  4239782 ccccactattctttagtttcaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgt 4239683  T
Q  467 ttcgttgtttatagcatatctaattaatacacattca 503  Q
    || | | ||||||||||| | ||| |||| |||||||    
T  4239682 tttgctatttatagcatacccaatgaatatacattca 4239646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 369 - 503
Target Start/End: Complemental strand, 23083337 - 23083201
Alignment:
Q  369 ccccactattctttagtt-aaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcat-aaacctatatgt 466  Q
    |||||||||||| ||||| |||||||||||||| | |||||| |||||| |||||||   ||||  |||||||| ||||||||| || ||||||||||||    
T  23083337 ccccactattctgtagtttaaaggggtaaatatctacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtaataaaacctatatgt 23083238  T
Q  467 ttcgttgtttatagcatatctaattaatacacattca 503  Q
    |||| | ||||||||||| | ||| |||| |||||||    
T  23083237 ttcgctatttatagcatacccaatgaatatacattca 23083201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 40127483 - 40127429
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  40127483 cctcctcaaggttctataacatctggtacgatgttttcataactatttctgatta 40127429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 4239918 - 4239864
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  4239918 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 4239864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 23083473 - 23083419
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  23083473 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 23083419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 38184170 - 38184128
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  38184170 tctataacatctcgtacgatgatttcataactatttctgatta 38184128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 503
Target Start/End: Original strand, 34116990 - 34117125
Alignment:
Q  369 ccccactattctttagttaaaggggtaaatattttcatagatatcggcatc-ttttataactattgtcactttagcatttaggtcat-aaacctatatgt 466  Q
    ||||| ||||||||| |||||||||||||||| | |||||| |||  |||| ||||||  ||||  ||||||||||||||||||||| |||||||||||     
T  34116990 ccccagtattctttatttaaaggggtaaatatgtacatagaaatcaacatcattttat-tctatgatcactttagcatttaggtcataaaacctatatga 34117088  T
Q  467 ttcgttgtttatagcatatctaattaatacacattca 503  Q
    ||   | |||||| |||| | ||| ||||||||||||    
T  34117089 ttttctatttataacatacccaatgaatacacattca 34117125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 17023455 - 17023497
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  17023455 tctataacatcttgtacaatgttttcataactatttctgatta 17023497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 17553948 - 17553990
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  17553948 tctataacatcttgtacaatgttttcataactatttctgatta 17553990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 25369312 - 25369270
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||||||| | || ||||||||||||||||||||||||||    
T  25369312 tctataacatcacatatgatgttttcataactatttctgatta 25369270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 359 - 503
Target Start/End: Original strand, 19105362 - 19105506
Alignment:
Q  359 ccactagtgtccccactattctttagttaaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcat-aaa 457  Q
    ||||||||| |||||||||||||||||||||||  ||||||||| |||||| |||  ||||||||||| ||||  ||||||||||||||||||||| |||    
T  19105362 ccactagtg-ccccactattctttagttaaaggattaaatatttacatagaaatcaacatcttttatatctatgatcactttagcatttaggtcataaaa 19105460  T
Q  458 cctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    ||||||||||| ||| ||||||||||||| ||| ||||||||||||    
T  19105461 cctatatgttttgttatttatagcatatccaatgaatacacattca 19105506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 318 - 503
Target Start/End: Complemental strand, 33465833 - 33465647
Alignment:
Q  318 tttattttgcccccactgatgtcatgatcctactagcgcctccactagtgtccccactattctttagttaaaggggtaaatattttcatagatatcggca 417  Q
    |||||||| |||||||| ||||| || ||| | ||| ||| | ||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||  |    
T  33465833 tttatttttcccccactaatgtcgtgctcccattagagccccgactagtgcccccactattctttaggtaaaggggtaaatgtttacatagatatcgata 33465734  T
Q  418 tcttttataactattgtcactttagcatttaggtcat-aaacctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    |||||||   ||||  ||||||||||||||||||||| |||||||||||||||| | ||||||||||| | ||| |||||| |||||    
T  33465733 tcttttaattctatgatcactttagcatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaatacatattca 33465647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 359 - 503
Target Start/End: Original strand, 31272100 - 31272248
Alignment:
Q  359 ccactagtgtccccactattctttagtt-aaaggggtaaatattttcatagatatcggcatcttttataa--ctattgtcactttagcatttaggtcat- 454  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| |||||| ||| || ||||||||||  ||||  |||||||| ||||||||||||     
T  31272100 ccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatcagcgtcttttataattctatgatcactttaacatttaggtcata 31272199  T
Q  455 aaacctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    |||||||||||||||| | ||||||||||| | ||| |||| |||||||    
T  31272200 aaacctatatgtttcgctatttatagcatacccaatgaatatacattca 31272248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 319 - 484
Target Start/End: Complemental strand, 32222675 - 32222509
Alignment:
Q  319 ttattttgcccccactgatgtcatgatcctactagcgcctccactagtgtccccactattctttagttaaaggggtaaatattttcatagatatcggcat 418  Q
    |||||||||||||||| ||||| || |||  ||||||||||| ||| || ||||||||||||||| |||||||||||||||||| |||| | |||| |||    
T  32222675 ttattttgcccccactaatgtcgtgttcccgctagcgcctccgctaatgcccccactattctttatttaaaggggtaaatatttacatataaatcgacat 32222576  T
Q  419 c-ttttataactattgtcactttagcatttaggtcat-aaacctatatgtttcgttgtttatagcata 484  Q
    | ||||||  ||||  ||||||||||||||||||||| ||||||||||| |||| | |||||| ||||    
T  32222575 cgttttat-tctatgatcactttagcatttaggtcataaaacctatatgcttcgctatttataacata 32222509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 359 - 503
Target Start/End: Complemental strand, 37261331 - 37261185
Alignment:
Q  359 ccactagtgtccccactattctttagtt-aaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcat-aa 456  Q
    ||||||||| |||| ||||||||||||| |||||||||||||||| |||||| || ||| |||||||   ||||  |||||||| |||||||||||| ||    
T  37261331 ccactagtgcccccgctattctttagtttaaaggggtaaatatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaa 37261232  T
Q  457 acctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    |||||||||||||| | ||||||||||| | ||| |||| |||||||    
T  37261231 acctatatgtttcgctatttatagcatacccaatgaatatacattca 37261185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 33465930 - 33465888
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33465930 tctataacatctcgtacgatgttttcataactatttctgatta 33465888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 37261452 - 37261398
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    |||| |||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  37261452 cctcatcaaggttctataacatctggtacgatgttttcataactatttctgatta 37261398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 319 - 457
Target Start/End: Complemental strand, 15134879 - 15134741
Alignment:
Q  319 ttattttgcccccactgatgtcatgatcctactagcgcctccactagtgtccccactattctttagttaaaggggtaaatattttcatagatatcggcat 418  Q
    |||||||||||||||| ||||| || ||  ||||| ||| | | || || |||||||||| |||| |||||||||||  ||||| |||||| |||| |||    
T  15134879 ttattttgcccccactaatgtcgtgctctcactagagcccctagtaatgcccccactattatttatttaaaggggtatttatttacatagaaatcgacat 15134780  T
Q  419 cttttataactattgtcactttagcatttaggtcataaa 457  Q
    | ||||   ||||  ||||||| ||||||||||||||||    
T  15134779 cgtttaagtctatgctcacttttgcatttaggtcataaa 15134741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 31271979 - 31272033
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    |||| |||||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  31271979 cctcatcaaggttctataacatctagtacgatgttttcataactatttttgatta 31272033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 39318873 - 39318915
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  39318873 tctataacatctcgtatgatgttttcataactatttctgatta 39318915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 12877548 - 12877590
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  12877548 tctataacatctcatatgatgttttcataactatttctgatta 12877590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 359 - 503
Target Start/End: Original strand, 36426988 - 36427134
Alignment:
Q  359 ccactagtgtccccactattctttagttaaaggggtaaatatttt--catagatatcggcatcttttataactattgtcactttagcatttaggtcataa 456  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||  |||||| |||| |||||||||   ||||  ||||||||||||||| |||||||    
T  36426988 ccactagtgcccccactattctttagttaaaggggtaaatatatttccatagaaatcgacatcttttaattctatgatcactttagcatttaagtcataa 36427087  T
Q  457 acctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    || |||||| |||| ||||||||||||| ||||| ||||||||||||    
T  36427088 acttatatgcttcgctgtttatagcatacctaatgaatacacattca 36427134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 359 - 503
Target Start/End: Original strand, 39521774 - 39521920
Alignment:
Q  359 ccactagtgtccccactattctttagtt-aaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcat-aa 456  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| |||||| |||||| |||||||   ||||  |||||||| |||||||||||| ||    
T  39521774 ccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaa 39521873  T
Q  457 acctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    |||||||||||||| | ||||||||||| | ||| |||| |||||||    
T  39521874 acctatatgtttcgctatttatagcatacccaatgaatatacattca 39521920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 359 - 503
Target Start/End: Original strand, 26670625 - 26670771
Alignment:
Q  359 ccactagtgtccccactattctttagtt-aaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcat-aa 456  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| |||||| |||||  |||||||   ||||  |||||||| |||||||||||| ||    
T  26670625 ccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatcggtgtcttttaattctatgatcactttaacatttaggtcataaa 26670724  T
Q  457 acctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    |||||||||||||| | ||||||||||| | ||| |||| |||||||    
T  26670725 acctatatgtttcgctatttatagcatacccaatgaatatacattca 26670771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 359 - 503
Target Start/End: Original strand, 26942222 - 26942368
Alignment:
Q  359 ccactagtgtccccactattctttagtt-aaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcat-aa 456  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| |||||| |||||  |||||||   ||||  |||||||| |||||||||||| ||    
T  26942222 ccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatcggtgtcttttaattctatgatcactttaacatttaggtcataaa 26942321  T
Q  457 acctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    |||||||||||||| | ||||||||||| | ||| |||| |||||||    
T  26942322 acctatatgtttcgctatttatagcatacccaatgaatatacattca 26942368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 359 - 503
Target Start/End: Original strand, 560096 - 560242
Alignment:
Q  359 ccactagtgtccccactattctttagtta-aaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcataaa 457  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||| |||||| |||||| |||||||   ||||  |||||||| |||||||||||||||    
T  560096 ccactagtgcccccactattctttagtttcaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaa 560195  T
Q  458 -cctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
     ||||||||||| | | ||||||||||| | ||| |||| |||||||    
T  560196 gcctatatgttttgctatttatagcatacccaatgaatatacattca 560242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 356 - 503
Target Start/End: Original strand, 9911947 - 9912095
Alignment:
Q  356 cctccactagtgtccccactattctttagttaaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcat- 454  Q
    |||||||||||| | ||||||||||||| || | ||||  | |  ||||||||| ||||||||||||||   ||||  |||||||||||||||||||||     
T  9911947 cctccactagtgcctccactattctttaatttacgggggtacttatttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcata 9912046  T
Q  455 aaacctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    ||| |||||||||||| | |||||| |||| ||||||||||||||||||    
T  9912047 aaatctatatgtttcgctatttataacatacctaattaatacacattca 9912095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 503
Target Start/End: Complemental strand, 36938964 - 36938818
Alignment:
Q  359 ccactagtgtccccactattctttagttaa-aggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcataaa 457  Q
    ||||||||| ||||||||||||||||||   |||||||||||||| |||||| |||||| |||||||   ||||  |||||||| |||||||||||||||    
T  36938964 ccactagtgcccccactattctttagtttcgaggggtaaatatttacatagaaatcggcgtcttttaattctataatcactttaacatttaggtcataaa 36938865  T
Q  458 -cctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
     ||||||||||| | | ||||||||||| | ||| |||| |||||||    
T  36938864 gcctatatgttttgctatttatagcatacccaatgaatatacattca 36938818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 359 - 503
Target Start/End: Original strand, 42000052 - 42000196
Alignment:
Q  359 ccactagtgtccccactattctttagtt-aaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcat-aa 456  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| |||||| |||||| |||||||   ||||  |||||||| ||  |||||||| ||    
T  42000052 ccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaaca--taggtcataaa 42000149  T
Q  457 acctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    |||||||||||| | | ||||||||||| | ||| |||| |||||||    
T  42000150 acctatatgttttgctatttatagcatacccaatgaatatacattca 42000196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 559975 - 560029
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  559975 cctcctcaaggttctataacatctggtacgatgttttcataactatttctgatta 560029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 36939102 - 36939048
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  36939102 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 36939048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 39521636 - 39521690
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  39521636 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 39521690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 26670499 - 26670541
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  26670499 tctataacatctggtacgatgttttcataactatttctgatta 26670541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 26942096 - 26942138
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  26942096 tctataacatctggtacgatgttttcataactatttctgatta 26942138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 36426850 - 36426904
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  36426850 cctcctcgaggttctataacatctggtacgatgttttcataactatttatgatta 36426904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 41999926 - 41999968
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  41999926 tctataacatctggtacaatgttttcataactatttctgatta 41999968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 359 - 503
Target Start/End: Original strand, 30649536 - 30649682
Alignment:
Q  359 ccactagtgtccccactattctttagtt-aaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcat-aa 456  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| |||||| |||||| |||||||   ||||  |||||||| |||||||||||| ||    
T  30649536 ccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaa 30649635  T
Q  457 acctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    |||||||||||||| | ||||||||||| | ||| |||| |||||||    
T  30649636 acctatatgtttcgctatttatagcatacccaatgaatatacattca 30649682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 267 - 457
Target Start/End: Complemental strand, 25480414 - 25480218
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta----aatgggattttattt--tgcccccactgatgtcatgatcctactagcgcctcc 360  Q
    |||||||||||| ||||||||||||||||||||||||||||||    |||| |||   || |  |||||||||| ||||| || || |||||| ||| ||    
T  25480414 tctataacatctggtacgatgttttcataactatttctgattacttaaatgtgatcagatatagtgcccccactaatgtcgtgctcttactagagccccc 25480315  T
Q  361 actagtgtccccactattctttagttaaaggggtaaatattttcatagatatcggcatc-ttttataactattgtcactttagcatttaggtcataaa 457  Q
    ||||||| ||||||||||||| |||||||||||||||||||| |||| | |||  | || ||||||  ||||  ||||||||||||||||||||||||    
T  25480314 actagtgcccccactattcttaagttaaaggggtaaatatttacatataaatcaacgtcgttttat-tctatgatcactttagcatttaggtcataaa 25480218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 267 - 457
Target Start/End: Complemental strand, 25488020 - 25487824
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta----aatgggattttattt--tgcccccactgatgtcatgatcctactagcgcctcc 360  Q
    |||||||||||| ||||||||||||||||||||||||||||||    |||| |||   || |  |||||||||| ||||| || || |||||| ||| ||    
T  25488020 tctataacatctggtacgatgttttcataactatttctgattacttaaatgtgatcagatatagtgcccccactaatgtcgtgctcttactagagccccc 25487921  T
Q  361 actagtgtccccactattctttagttaaaggggtaaatattttcatagatatcggcatc-ttttataactattgtcactttagcatttaggtcataaa 457  Q
    ||||||| ||||||||||||| |||||||||||||||||||| |||| | |||  | || ||||||  ||||  ||||||||||||||||||||||||    
T  25487920 actagtgcccccactattcttaagttaaaggggtaaatatttacatataaatcaacgtcgttttat-tctatgatcactttagcatttaggtcataaa 25487824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 359 - 503
Target Start/End: Original strand, 30654218 - 30654364
Alignment:
Q  359 ccactagtgtccccactattctttagtta-aaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcataaa 457  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||| |||||| |||||| |||||||   ||||  |||||||| |||||||||||||||    
T  30654218 ccactagtgcccccactattctttagtttcaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaa 30654317  T
Q  458 -cctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
     ||||||||||| | | ||||||||||| | ||| |||| |||||||    
T  30654318 gcctatatgttttgctatttatagcatacccaatgaatatacattca 30654364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 369 - 503
Target Start/End: Complemental strand, 17972127 - 17971991
Alignment:
Q  369 ccccactattctttagtta-aaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcataaa-cctatatgt 466  Q
    ||||||||||||||||||  ||||||||||||||| |||||| |||||| |||||||   ||||  |||||||| ||||||||||||||| |||||||||    
T  17972127 ccccactattctttagtttcaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgt 17972028  T
Q  467 ttcgttgtttatagcatatctaattaatacacattca 503  Q
    || | | ||||||||||| | ||| |||| |||||||    
T  17972027 tttgctatttatagcatacccaatgaatatacattca 17971991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 17972263 - 17972209
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  17972263 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 17972209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 30649398 - 30649452
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  30649398 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 30649452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 30654097 - 30654151
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  30654097 cctcctcgaggttctataacatctggtacgatgttttcataactatttctgatta 30654151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 9182308 - 9182254
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||| ||| |||||||||||| ||| ||| ||||||||||||||||||||||    
T  9182308 cctcctcgaggttctataacatctggtatgatattttcataactatttctgatta 9182254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 503
Target Start/End: Complemental strand, 9182188 - 9182043
Alignment:
Q  359 ccactagtgtccccactattctttagttaaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcataaa- 457  Q
    ||||||||| ||||||||||||||| || | ||||  | |   |||||||| |||  |||||||||   ||||  |||||||| |||||||||||||||     
T  9182188 ccactagtgcccccactattctttaatttacgggggtacttacttcatagaaatcaacatcttttaattctatgatcactttaacatttaggtcataaaa 9182089  T
Q  458 cctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    |||| ||| ||| || |||||| |||| ||||| ||||||||||||    
T  9182088 cctacatgcttcattatttataacatacctaatgaatacacattca 9182043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 30616168 - 30616205
Alignment:
Q  272 aacatctcgtacgatgttttcataactatttctgatta 309  Q
    |||||||| |||||||||||||||||||||||||||||    
T  30616168 aacatctcctacgatgttttcataactatttctgatta 30616205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 457
Target Start/End: Original strand, 28450512 - 28450660
Alignment:
Q  309 aaatgggattttattttgcccccactgatgtcatgatcctactagcgcctccactagtgtccccactattctttagttaaaggggtaaatattttcatag 408  Q
    |||| |||| || ||||||||||||| ||||| || ||  ||||||||| | ||||||| | ||||||||||||| |||||| ||||  |||||  ||||    
T  28450512 aaataggatatttttttgcccccactaatgtcgtgctctcactagcgccccaactagtgccaccactattctttatttaaagaggtatttatttagatag 28450611  T
Q  409 atatcggcatcttttataactattgtcactttagcatttaggtcataaa 457  Q
    | |||  |||  ||||    |||  ||||||||||||||||||||||||    
T  28450612 aaatcaacattgtttaattttatgctcactttagcatttaggtcataaa 28450660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 359 - 484
Target Start/End: Original strand, 10138646 - 10138772
Alignment:
Q  359 ccactagtgtccccactattctttagtt-aaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcataaa 457  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| |||||| |||||| |||||||   ||||  |||||||| |||||||||||||||    
T  10138646 ccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaa 10138745  T
Q  458 cctatatgtttcgttgtttatagcata 484  Q
     |||||||||||| | |||||||||||    
T  10138746 actatatgtttcgctatttatagcata 10138772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 359 - 484
Target Start/End: Original strand, 25853737 - 25853864
Alignment:
Q  359 ccactagtgtccccactattctttagtt-aaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcat-aa 456  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||| |||||| || ||| |||||||   ||||  |||||||| |||||||||||| ||    
T  25853737 ccactagtgcccccactattctttagtttaaaggggtaaagatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaa 25853836  T
Q  457 acctatatgtttcgttgtttatagcata 484  Q
    |||||||||||||| | |||||||||||    
T  25853837 acctatatgtttcgctatttatagcata 25853864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 10138508 - 10138562
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||||||| |||||||||| | ||||||||||||||||||||||||||||||    
T  10138508 cctcctcaaggttctataacatttggtacgatgttttcataactatttctgatta 10138562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 503
Target Start/End: Complemental strand, 47453632 - 47453487
Alignment:
Q  359 ccactagtgtccccactattctttagttaaaggggtaaatattttcatagatatcggca-tcttttataactattgtcactttagcatttaggtcat-aa 456  Q
    ||||||| | ||||||||||||||| |||||||||||||||||| |||||| |||  || | ||||||  ||||  |||||||| |||||||||||| ||    
T  47453632 ccactagcgcccccactattctttatttaaaggggtaaatatttacatagaaatcaacattgttttat-gctatgatcactttaacatttaggtcataaa 47453534  T
Q  457 acctatatgtttcgttgtttatagcatatctaattaatacacattca 503  Q
    ||||||||| ||  || |||||| |||| | ||| ||||||||||||    
T  47453533 acctatatgattttttatttataacatacccaatgaatacacattca 47453487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 16750291 - 16750252
Alignment:
Q  270 ataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  16750291 ataacatctagtacgatgttttcataactatttctgatta 16750252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 409
Target Start/End: Complemental strand, 16750208 - 16750158
Alignment:
Q  359 ccactagtgtccccactattctttagttaaaggggtaaatattttcataga 409  Q
    ||||||| | ||||||||||||||| |||||||||||||||||| ||||||    
T  16750208 ccactagagcccccactattctttatttaaaggggtaaatatttacataga 16750158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 25853626 - 25853668
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||||||||  |||||||||||||||||||||||||||||    
T  25853626 tctataacatctgatacgatgttttcataactatttctgatta 25853668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 47453774 - 47453720
Alignment:
Q  255 cctcctcaaggatctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||| ||| |||||||||||| |||| |||||||||||||||||| ||||||    
T  47453774 cctcctcgaggttctataacatctagtacaatgttttcataactatttttgatta 47453720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 402 - 503
Target Start/End: Original strand, 81710 - 81812
Alignment:
Q  402 ttcatagatatcggcatcttttataactattgtcactttagcatttaggtcataaa-cctatatgtttcgttgtttatagcatatctaattaatacacat 500  Q
    |||||||| ||| ||||||||||   ||||  |||||||| ||||||||||||||| |||||||| |||||| |||||| |||||||||| |||||||||    
T  81710 ttcatagaaatcagcatcttttaattctatgatcactttaacatttaggtcataaaacctatatgcttcgttatttataacatatctaatgaatacacat 81809  T
Q  501 tca 503  Q
    |||    
T  81810 tca 81812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 81573 - 81615
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
T  81573 tctataacatctcgtacaatgttttcataactatttctaatta 81615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 357 - 457
Target Start/End: Original strand, 21667913 - 21668012
Alignment:
Q  357 ctccactagtgtccccactattctttagttaaaggggtaaatattttcatagatatcggcatcttttataactattgtcactttagcatttaggtcataa 456  Q
    ||||| ||||| | ||||||||||||| |||| ||||||||||||| |||||| |||| |||||||||    |||  |||||||||||||||||||||||    
T  21667913 ctccaatagtgcctccactattctttatttaa-ggggtaaatatttacatagaaatcgacatcttttaattatatgatcactttagcatttaggtcataa 21668011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 21667780 - 21667822
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||||||||||||| ||||  |||||||||||||||||||    
T  21667780 tctataacatctcgtacaatgtactcataactatttctgatta 21667822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 359 - 422
Target Start/End: Complemental strand, 16836291 - 16836227
Alignment:
Q  359 ccactagtgtccccactattctttagtt-aaaggggtaaatattttcatagatatcggcatcttt 422  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| |||||| |||||| |||||    
T  16836291 ccactagtgcccccactattctttagtttaaaggggtaaatatttacatagaaatcggcgtcttt 16836227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 12796343 - 12796301
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  12796343 tctataacatctcctacgatgctttcataactatttctgatta 12796301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 66013 - 66055
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  66013 tctataacatcacgtatgatgttttcataactatttctgatta 66055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 61811 - 61853
Alignment:
Q  267 tctataacatctcgtacgatgttttcataactatttctgatta 309  Q
    ||||||||||| | || ||||||||||||||||||||||||||    
T  61811 tctataacatcacatatgatgttttcataactatttctgatta 61853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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