View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16237_low_7 (Length: 458)
Name: NF16237_low_7
Description: NF16237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16237_low_7 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Original strand, 439315 - 439735
Alignment:
| Q |
19 |
atccaagcatatgtgtcactgatcatggctgatgttaatgcaatcttcccaagaccagtatagagaagtttaagctcagacagggtgtggactacaactg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
439315 |
atccaagcatatgtgtcactgatcatggctgatgttaatgcaaccttcccaagaccagtatagagaagtttaagctcagacagggtgtggactacaactg |
439414 |
T |
|
| Q |
119 |
gaaaacctgtcacagtaagaactaaagtccataatatataaacatttattgtactttcttcaagattagatccatcacccttgccataaaattttcgatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
439415 |
gaaaacctgtcacagtaagaactaaagtccataatatataaacatttattgtactttcttcaagattagatccatcacccttgccataaaattttcgatg |
439514 |
T |
|
| Q |
219 |
tagaaggtataaagctggtcccatcaccattggaaaaattatcccagaaattgcaatagttgcagctttctttttaacatgtaaaatggtattcaagttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
439515 |
tagaaggtataaagctggtcccatcaccattggaaaaattatcccagaaattgcaatagttgcagctttctttttaacatgtaaaatggtattcaagttc |
439614 |
T |
|
| Q |
319 |
acctccaaaccacttaggaatgcataatatacgactccaatagttgatataacttcgacactgatcatattagatacaggaaaaaggtatagggccgtag |
418 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
439615 |
acctccaaaccacttaggaatgcataatatataacaccaatagttgatataacttcgacactgatcatattagatacaggaaaaaggtatagggccgtag |
439714 |
T |
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| Q |
419 |
atggtgcaaaagcccatagca |
439 |
Q |
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| T |
439715 |
atggtgcaaaagcccatagca |
439735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 28607588 - 28607200
Alignment:
| Q |
19 |
atccaagcatatgtgtcactgatcatggctgatgttaatgcaatcttcccaagaccagtatagagaagtttaagctcagacagggtgtggactacaactg |
118 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||| |||||||| |||||||| |||||||| |||| |||| |
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| T |
28607588 |
atccaagcatatgtgtcactgatcatagctgttgttaatgcaaccttaccaagaccagtataaagaagtttgagctcagaaagggtgtgagctacgactg |
28607489 |
T |
|
| Q |
119 |
gaaaacctgtcacagtaagaactaaagtccataatatataaacatttattgtactttcttcaagattagatccatcacccttgccataaaattttcgatg |
218 |
Q |
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|||||||||||||||| |||||||||||||||| || | || ||||| ||||| |||||||||| | ||||||||||||||| |||||||| |||||||| |
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| T |
28607488 |
gaaaacctgtcacagtgagaactaaagtccatattacacaagcatttgttgtattttcttcaagttcagatccatcaccctttccataaaaatttcgatg |
28607389 |
T |
|
| Q |
219 |
tagaaggtataaagctggtcccatcaccattggaaaaattatcccagaaattgcaatagttgcagctttctttttaacatgtaaaatggtattcaagttc |
318 |
Q |
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||||||||||||||| ||||||||||||||||||||||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28607388 |
tagaaggtataaagccggtcccatcaccattggaaaaatgattccaaaaattgcaatagttgcagatttctttttaacatgtaaaatggtattcaagttc |
28607289 |
T |
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| Q |
319 |
acctccaaaccacttaggaatgcataatatacgactccaatagttgatataacttcgacactgatcatattagatacaggaaaaaggta |
407 |
Q |
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| ||| |||||||||||||||||||| |||| ||| |||||| |||||| |||||| | ||||||||||| |||||| |||||||| |
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| T |
28607288 |
atctctaaaccacttaggaatgcatagtatatgacaccaatatttgatagaacttcaatgttgatcatattacttacagggaaaaggta |
28607200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 360
Target Start/End: Original strand, 7590201 - 7590294
Alignment:
| Q |
266 |
aaattgcaatagttgcagctttctttttaacatgtaaaatggtattcaagttcacctccaaaccacttaggaatgcataatatacgactccaata |
360 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || || | ||||||||||| |||| ||| |||||| |
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| T |
7590201 |
aaatcgcaatggttgcagctttctttttaacatgtaaaatggtattcaagttcacctccgaa-cagtgaggaatgcatagtatatgacaccaata |
7590294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 13658963 - 13658650
Alignment:
| Q |
19 |
atccaagcatatgtgtcactgatcatggctgatgttaatgcaatcttcccaagaccagtatagagaagtttaagctcagacagggtgtggactacaactg |
118 |
Q |
| |
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||||||| |||||||||||||||||| | || |||||||||| | | ||||||||||||| |||||||| |||||||| || ||||| |||||| || |
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| T |
13658963 |
atccaagaatatgtgtcactgatcatagatgctgttaatgcagtttgaccaagaccagtattaagaagttttagctcagaaagtgtgtgagctacaattg |
13658864 |
T |
|
| Q |
119 |
gaaaacctgtcacagtaagaactaaagtccataatatataaacatttattgtactttcttcaagattagatccatcacccttgccataaaattttcgatg |
218 |
Q |
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||||| ||||||||| |||| |||||||||| ||||||||| || ||||| | | |||||| |||||||||||||| || ||||||||||||||||| |
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| T |
13658863 |
aaaaacttgtcacagtgagaattaaagtccattctatataaactttcattgtgcatctttcaagtttagatccatcaccatttccataaaattttcgatg |
13658764 |
T |
|
| Q |
219 |
tagaaggtataaagctggtcccatcaccattggaaaaattatcccagaaattgcaatagttgcagctttctttttaacatgtaaaatggtattcaagttc |
318 |
Q |
| |
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||||| |||||| | ||||||||||||||||||||| || ||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||| | |
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| T |
13658763 |
tagaatgtataacggtggtcccatcaccattggaaagatgatcccggaaatcgcaatggttgcagctttctttttaacatgtaaaatgccattcaagtcc |
13658664 |
T |
|
| Q |
319 |
acctccaaaccact |
332 |
Q |
| |
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| T |
13658663 |
atctccaaaccact |
13658650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 21 - 360
Target Start/End: Complemental strand, 13651472 - 13651133
Alignment:
| Q |
21 |
ccaagcatatgtgtcactgatcatggctgatgttaatgcaatcttcccaagaccagtatagagaagtttaagctcagacagggtgtggactacaactgga |
120 |
Q |
| |
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||||| |||||||||||||||||| |||| ||||||||| ||| |||||||| |||| |||||||| ||||| || || ||||| |||||| || | |
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| T |
13651472 |
ccaagaatatgtgtcactgatcatagctgttgttaatgccgtctgaccaagaccggtattaagaagtttgagctcggaaagtgtgtgagctacaattgaa |
13651373 |
T |
|
| Q |
121 |
aaacctgtcacagtaagaactaaagtccataatatataaacatttattgtactttcttcaagattagatccatcacccttgccataaaattttcgatgta |
220 |
Q |
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|||| ||||| ||| ||||||||||||||| || ||||||||| |||||||||||||| || |||| ||||||||| ||||||||||| | |||||||| |
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| T |
13651372 |
aaacttgtcatagtgagaactaaagtccattgtacataaacattcattgtactttcttcgagtttaggtccatcaccattgccataaaagtatcgatgta |
13651273 |
T |
|
| Q |
221 |
gaaggtataaagctggtcccatcaccattggaaaaattatcccagaaattgcaatagttgcagctttctttttaacatgtaaaatggtattcaagttcac |
320 |
Q |
| |
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|| ||||||| ||| ||||| ||||| ||||| || ||||| ||||| ||||| |||||| ||||||||||||||||||||||| ||||||||| || |
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| T |
13651272 |
gattgtataaaattggccccattaccatcggaaagatgatcccggaaatcgcaatggttgcatctttctttttaacatgtaaaatgctattcaagtccat |
13651173 |
T |
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| Q |
321 |
ctccaaaccacttaggaatgcataatatacgactccaata |
360 |
Q |
| |
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|||||||||||| | |||||||| |||| ||| |||||| |
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| T |
13651172 |
ctccaaaccactgataaatgcatagtatatgacaccaata |
13651133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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