View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16238_high_3 (Length: 357)
Name: NF16238_high_3
Description: NF16238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16238_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 30729641 - 30729975
Alignment:
| Q |
18 |
acaattgatgtccatgtttagtgtggacgaggtttcaaggaataataccatgatgccaccaccagctacattgtcatctaactctaacccttcaagtcct |
117 |
Q |
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| T |
30729641 |
acaattgatgtccatgtttagtgtggacgaggtttcaaggaataataccatgatgccaccaccagctacattgtcatctaactctaacccttcaactcct |
30729740 |
T |
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| Q |
118 |
tctgatcataacagcatcaatgatgagaaagaggaagatgaggaggaaaagatgcaacagaaacaattgaagcatgaatctgatgaggatgaaattggtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30729741 |
tctgatcataacagcatcaatgatgagaaagaggaagatgaggaggaaaagatgcaacagaaacaattgaagcatgaatctgatgaggatgaaattggtg |
30729840 |
T |
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| Q |
218 |
aatgcaaacaggaaaatggaggagttgtgaatgatgaagatgacaataatggaaatacaacaactttttcaagtccaaaaattactgaccccaagagggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30729841 |
aatgcaaacaggaaaatggaggagttgtgaatgatgaagatgacaataatggaaatacaacaactttttcaagtccaaaaattactgaccccaagagggt |
30729940 |
T |
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| Q |
318 |
caaaaggtactactcaaacatattattcatctcac |
352 |
Q |
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||||||||||| |||||||||||||||||| |||| |
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| T |
30729941 |
caaaaggtactgctcaaacatattattcatgtcac |
30729975 |
T |
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