View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16238_low_1 (Length: 511)
Name: NF16238_low_1
Description: NF16238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16238_low_1 |
 | |
|
| [»] chr7 (11 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Complemental strand, 29578906 - 29578414
Alignment:
| Q |
19 |
aaactttctcttgaaacctttgtttattttattcaacgaggattcaaagatgatttcaagctcctttaaaaagtctacaaacacgtatgtttcattgtgc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29578906 |
aaactttctcttgaaacctttgtttattttattcaacgaggattcaaagatgatttcaagctcctttaaaaagtctacaaacacgtatgtttcattgtgc |
29578807 |
T |
|
| Q |
119 |
tggttgccatgattatcaatcaaactctttccattcataatcacagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29578806 |
tggttgccatgattatcaatcaaactctttccattcataatcgcagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcct |
29578707 |
T |
|
| Q |
219 |
ccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctcagcttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29578706 |
ccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctcagcttc |
29578607 |
T |
|
| Q |
319 |
ttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcagtgaca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29578606 |
ttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcagtgaca |
29578507 |
T |
|
| Q |
419 |
tttaatataccatctgcatcgatagcaaaacatactttgatgcaaaggccacggggagcaggaggaacaaagagacgaaacaaacccaacaag |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29578506 |
tttaatataccatctgcatcgatagcaaaacatactttgatgcaaaggccacggggagcaggaggaacaaagagacgaaacaaacccaacaag |
29578414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 62 - 511
Target Start/End: Complemental strand, 29583032 - 29582583
Alignment:
| Q |
62 |
tcaaagatgatttcaagctcctttaaaaagtctacaaacacgtatgtttcattgtgctggttgccatgattatcaatcaaactctttccattcataatca |
161 |
Q |
| |
|
||||||||| || ||||||||| |||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
29583032 |
tcaaagatgccttgaagctccttcaaaaagtccacaaacacgcatgcttctttgtgctggttgccatgattatcaatcaaactttttccgttcataattg |
29582933 |
T |
|
| Q |
162 |
cagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagcatt |
261 |
Q |
| |
|
|||||| |||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
29582932 |
cagaattgatctttgttttgtctgcaggagtcaccatggaactaacgttgttatcctccattactttactcattttgtaaagatagtcgtccaaagcatt |
29582833 |
T |
|
| Q |
262 |
taccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctatta |
361 |
Q |
| |
|
| ||||||||| || ||| ||||||| ||||||||||||||| ||||| |||||||||||||||| ||||||||||| |||||| | ||||| ||| |
|
|
| T |
29582832 |
cattgctctagctctcatttggaacttcagatcttcaaccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccattt |
29582733 |
T |
|
| Q |
362 |
tcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatactttgatgc |
461 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| | |
|
|
| T |
29582732 |
acatttgttattgtaatctcttttttatttccagtggtttcttcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttgatac |
29582633 |
T |
|
| Q |
462 |
aaaggccacggggagcaggaggaacaaagagacgaaacaaacccaacaag |
511 |
Q |
| |
|
|||||| || |||||| |||||| ||||||| ||||||||||| |||| |
|
|
| T |
29582632 |
gaaggccgcgaggagcacgaggaattaagagactaaacaaacccagcaag |
29582583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 133 - 455
Target Start/End: Original strand, 8608968 - 8609290
Alignment:
| Q |
133 |
atcaatcaaactctttccattcataatcacagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactc |
232 |
Q |
| |
|
|||||||||| ||||||| || || || ||| || || |||||||||||| | || | ||||||||| ||||||| ||||| ||||||||| | | |
|
|
| T |
8608968 |
atcaatcaaattctttccttttatcattgcagcattgagcttcattttgtcagtagaggtaagcatggaagtaacactcccatccttcattactttccgc |
8609067 |
T |
|
| Q |
233 |
gttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctcagcttcttggatcattcgct |
332 |
Q |
| |
|
| |||||||| ||||| |||||| |||| | ||| || |||||| || |||||||| ||||| | ||||| |||||||||||||| ||||||| || |
|
|
| T |
8609068 |
atgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttcctctttgaaattctcagcttcttgaatcattctct |
8609167 |
T |
|
| Q |
333 |
caatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcagtgacatttaatataccatc |
432 |
Q |
| |
|
||||||||| ||||||||||| | ||| || |||||||| || || || ||||||| ||| | ||||||||||| |||| |||||||||||||||||| |
|
|
| T |
8609168 |
caatttcttcagttgaaagtcgaccattttcctttgttatagtaatatctttcttattaccactggtttcttcctctgcagagacatttaatataccatc |
8609267 |
T |
|
| Q |
433 |
tgcatcgatagcaaaacatactt |
455 |
Q |
| |
|
||||| |||||||| ||||||| |
|
|
| T |
8609268 |
agcatctatagcaaagcatactt |
8609290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 194 - 375
Target Start/End: Original strand, 8601083 - 8601264
Alignment:
| Q |
194 |
agcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttct-cttgaaacttcata |
292 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||| ||| | ||||||||||||| |||| | |||| | ||| || |||||| |||||| |||||| |
|
|
| T |
8601083 |
agcatggaactaacactatcatccttcattacttttctcatagtgtaaagataatcatccagatcattcattgctttaactttcttcttgaa-cttcatg |
8601181 |
T |
|
| Q |
293 |
tcttcaaccttgaatttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgt |
375 |
Q |
| |
|
|||||| | ||||| |||||||||||||||||||||| ||||||||||| ||||| ||||||| || ||||| |||||||| |
|
|
| T |
8601182 |
tcttcatctttgaaattctcagcttcttggatcattctctcaatttcttcggttgatagtcttcccttttcattcgttattgt |
8601264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 214 - 453
Target Start/End: Complemental strand, 7878769 - 7878530
Alignment:
| Q |
214 |
atcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctca |
313 |
Q |
| |
|
||||| ||||||||| ||| || | |||| ||||| ||||||||||| || |||||| | ||||| ||||||||| |||||| |||||| | |||| |
|
|
| T |
7878769 |
atccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactca |
7878670 |
T |
|
| Q |
314 |
gcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcag |
413 |
Q |
| |
|
||||||| ||| ||| ||||||||||| |||| ||||||| ||| ||||| || ||||| || || |||| || ||| |||||||||||| || | |
|
|
| T |
7878669 |
gcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcgg |
7878570 |
T |
|
| Q |
414 |
tgacatttaatataccatctgcatcgatagcaaaacatac |
453 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
7878569 |
agacatttaatataccatcagcatctatatcaaaacatac |
7878530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 59 - 454
Target Start/End: Original strand, 8544616 - 8545005
Alignment:
| Q |
59 |
gattcaaagatgatttcaagctcctttaaaaagtctacaaacacgtatgtttcattgtgctggttgccatgattatcaatcaaactctttccattcataa |
158 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||| |||||||| ||| || | || |||||| |||||||||||||| ||||| || || | |
|
|
| T |
8544616 |
gattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttg------ttatcaatcaaactttttccctttatca |
8544709 |
T |
|
| Q |
159 |
tcacagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagc |
258 |
Q |
| |
|
| |||||| ||| |||||||||||| |||| || ||| ||||| |||||| | ||||| ||||||||| ||| ||||||||||||| |||||||| |
|
|
| T |
8544710 |
ttgcagaattgatattcattttgtctacaggggcgagcttggaattaacacaatcatccttcattactttcctcacattgtaaagataatactccaaagc |
8544809 |
T |
|
| Q |
259 |
atttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttcta |
358 |
Q |
| |
|
|||| ||| | |||| | | |||||||| |||| | ||||||| || |||||||| |||||||||| ||||||||||| |||| | ||||| | |
|
|
| T |
8544810 |
atttcttgcttcaactttttttctgaacttcatgtcttgagccttgaaattgtcagcttcctggatcattctctcaatttcttcccttgataatcttcca |
8544909 |
T |
|
| Q |
359 |
ttatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatact |
454 |
Q |
| |
|
|| ||| | |||||||| || ||| ||||| | ||| | |||||||| |||| ||| ||||||| ||||| ||||| |||||||| |||||| |
|
|
| T |
8544910 |
ttttcaatagttattgtaatttcattcttactaccactggtttcttctgttgcagagacgtttaataaaccattagcatctatagcaaagcatact |
8545005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 200 - 459
Target Start/End: Original strand, 8580815 - 8581074
Alignment:
| Q |
200 |
gaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttc-tcttgaaacttcatatcttca |
298 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||| ||| || ||||| ||||| |||| ||| |||| | |
|
|
| T |
8580815 |
gaactaacacaattatcctccattactttcctcactttgtaaagataatcgtccaaagcatttattgctttaactttcttcttg-aactccatgtcttga |
8580913 |
T |
|
| Q |
299 |
accttgaatttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttg |
398 |
Q |
| |
|
|||| || | ||||||| | |||||| ||||||||| | |||||||||||| ||| ||||| |||||||| || | ||||| | || ||| |
|
|
| T |
8580914 |
gccttaaaaatttcagcttgtaaaatcattttctcaatttcctctcttgaaagtcttccattttcattcgttattgtaatagccttcttactagcatttg |
8581013 |
T |
|
| Q |
399 |
tttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatactttgat |
459 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| | ||| |||| ||| ||| ||||||| |
|
|
| T |
8581014 |
tttcttcctctgcagagacatttaatataccatcagaatctatagaaaagcattctttgat |
8581074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 194 - 453
Target Start/End: Complemental strand, 8383935 - 8383676
Alignment:
| Q |
194 |
agcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatat |
293 |
Q |
| |
|
||||| ||| ||||||| | ||| | ||||||||| ||| | |||||||||||||| ||||||||||| | ||| || |||||| ||||||||| | |
|
|
| T |
8383935 |
agcattgaagtaacactatcatctttcattactttcctcatgttgtaaagataatcgtccaaagcattcattgctttaactttcttcataaacttcatgt |
8383836 |
T |
|
| Q |
294 |
cttcaaccttgaatttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttcc |
393 |
Q |
| |
|
||||| ||||||| ||||| || ||||||||||||| ||||||||| | |||||| | |||| ||| ||||| ||||||| || || |||||| || |
|
|
| T |
8383835 |
cttcagccttgaaattctctgcctcttggatcattctctcaatttcatcagttgataaacttccattttcattctttattgtaatatcttgcttattccc |
8383736 |
T |
|
| Q |
394 |
agttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatac |
453 |
Q |
| |
|
| || ||||| | ||||| |||||||||||||||||| |||| | || ||||||||| |
|
|
| T |
8383735 |
acaggtatcttctttagcagagacatttaatataccatcaacatctacagaaaaacatac |
8383676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 453
Target Start/End: Original strand, 8589762 - 8590009
Alignment:
| Q |
206 |
acactgttatcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttga |
305 |
Q |
| |
|
||||||| ||||| ||||||||| ||| | | |||||||||||| || |||||||| | |||||| |||||| | |||||| |||||| |||||| |
|
|
| T |
8589762 |
acactgtcatccttcattactttcctcatgtcgtaaagataatcatctaaagcattcattgctctaactttcttcacatgcttcatgtcttcagccttga |
8589861 |
T |
|
| Q |
306 |
atttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttc |
405 |
Q |
| |
|
| | ||||||||| |||||||||| ||||||||||| ||| ||||||| ||| ||||| |||||||| || | | ||||| ||| | ||||||| |
|
|
| T |
8589862 |
agtgctcagcttcctggatcattctctcaatttcttcgcttgtcagtcttccattttcattggttattgtaatattttttttattaccactgctttcttc |
8589961 |
T |
|
| Q |
406 |
ctcagcagtgacatttaatataccatctgcatcgatagcaaaacatac |
453 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| |||| ||| ||||| |
|
|
| T |
8589962 |
ctcagcagacacgtttaatataccatcagcatctatagaaaagcatac |
8590009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 8569464 - 8569567
Alignment:
| Q |
235 |
tttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctcagcttcttggatcattcgctca |
334 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| | |||||| || |||||||| |||| | ||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
8569464 |
tttgtaaagataatcatccaaagcatttcttgcttcaactttctttttgaacttcatgtcttgagccttgaaattctcagcttcctggatcattctctca |
8569563 |
T |
|
| Q |
335 |
attt |
338 |
Q |
| |
|
|||| |
|
|
| T |
8569564 |
attt |
8569567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 354
Target Start/End: Original strand, 8575431 - 8575571
Alignment:
| Q |
214 |
atcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttct-cttgaaacttcatatcttcaaccttgaatttctc |
312 |
Q |
| |
|
||||| ||||| ||| |||| |||| ||||||||| ||||| ||||||| ||| || |||||| |||||| || ||| |||| | ||||||| | || |
|
|
| T |
8575431 |
atccttcattaatttcctcgcattgtgaagataatcgtccaatgcatttattgctgtaactttcttcttgaa-ctccatgtcttgagccttgaaaatttc |
8575529 |
T |
|
| Q |
313 |
agcttcttggatcattcgctcaatttcttgagttgaaagtct |
354 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||| || ||||| |
|
|
| T |
8575530 |
agcttcttgaatcattctcgcaatttcttgagtcgatagtct |
8575571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 176 - 455
Target Start/End: Original strand, 12527598 - 12527877
Alignment:
| Q |
176 |
attttgtctgcaggagccagcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctt |
275 |
Q |
| |
|
||||||||| |||| | ||||||||||||||||| ||||||| ||| | ||| ||| | ||||||||| || ||||||||||| | ||| || ||| |
|
|
| T |
12527598 |
attttgtctacaggtgtcagcatggaactaacacaattatccttcatgattttcctcacatggtaaagatagtcatccaaagcattgattgctttaactt |
12527697 |
T |
|
| Q |
276 |
tctcttgaaacttcatatcttcaaccttgaatttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgt |
375 |
Q |
| |
|
||| || ||||||||||||||| ||||||| ||||||||||| |||||||||| | ||||||||| | |||| | ||||| ||| |||||||||||||| |
|
|
| T |
12527698 |
tctttttgaacttcatatcttcagccttgaaattctcagcttcctggatcattctcccaatttcttcacttgataatcttccattttcatttgttattgt |
12527797 |
T |
|
| Q |
376 |
gatctcactcttatttccagttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatactt |
455 |
Q |
| |
|
|| || ||||||| ||| | |||| ||||| |||| ||| ||||||||||| || ||||| |||||||| ||||||| |
|
|
| T |
12527798 |
aatatctttcttattaccactggttttttccttcgcagagacttttaatataccgtcagcatctatagcaaagcatactt |
12527877 |
T |
|
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