View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16238_low_2 (Length: 507)
Name: NF16238_low_2
Description: NF16238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16238_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 122 - 491
Target Start/End: Complemental strand, 42159632 - 42159249
Alignment:
| Q |
122 |
aagttaattgcttttctaaaatgaatttctagaagctagatcttcgtacttgttggtggttaagatt-gagaaaatccattttaaacctttttaacccaa |
220 |
Q |
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| T |
42159632 |
aagttaattgcttttctaaaatgaatttctagaagctagatcttcgtacttgttggtggttaagatttgagaaaatccattttaaacctttttaacccaa |
42159533 |
T |
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| Q |
221 |
atttccaagtagtcaaaaccacatagcaacacgttcagttcaatgaaagcaacaaacccaaggaacagctagcattatatatttcctctctaatacgaca |
320 |
Q |
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| T |
42159532 |
atttccaagtagtcaaaaccacatagcaacacgttcagttcaatgaaagcaacaaacccaaggaacaactagcattatatatttcctctctaatacgaca |
42159433 |
T |
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| Q |
321 |
cattattctacttataggaaactttagtcgctatagacgaagcactttaaaaatcatttcagaaagaaaaa-------------actaatctactatata |
407 |
Q |
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| T |
42159432 |
cattcttctacttataggaaactttagtcgctatagacgaagcactttaaaaatcatttcagaaagaaaaaaaattatatacatactaatctactatata |
42159333 |
T |
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| Q |
408 |
tagtaagaagatatatatgttatctgtttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatat |
491 |
Q |
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| T |
42159332 |
tagtaagaagatatatatgttatctgtttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatat |
42159249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 42159785 - 42159661
Alignment:
| Q |
1 |
ttaataatttactatacagtgttttagcaataataatttaccatacatgtatactaaaaatatccattcgaaac--aaacaaacaaaaatgtacactaaa |
98 |
Q |
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| T |
42159785 |
ttaataatttactatacagtgttttagcaataataatttaccatacatgtatactaaaaatatccattcgaaacaaaaaaaaaaaaaaatgtacactaaa |
42159686 |
T |
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| Q |
99 |
aatatcacttaggagtaaaccaaaa |
123 |
Q |
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| T |
42159685 |
aatatcacttaggagtaaaccaaaa |
42159661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 430 - 491
Target Start/End: Complemental strand, 42180284 - 42180223
Alignment:
| Q |
430 |
tctgtttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatat |
491 |
Q |
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| T |
42180284 |
tctgtttgagaaactagttagtaaaatggcatccgtattggcaggggatgaggtgacaatat |
42180223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 435 - 491
Target Start/End: Complemental strand, 42146992 - 42146936
Alignment:
| Q |
435 |
ttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatat |
491 |
Q |
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| T |
42146992 |
ttgagaaattagttagtaaaatggcatcggtaatggcaagggatgaggtgacaatat |
42146936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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