View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16238_low_3 (Length: 457)
Name: NF16238_low_3
Description: NF16238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16238_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 8 - 443
Target Start/End: Original strand, 32000005 - 32000441
Alignment:
| Q |
8 |
ccaagaatatattaaacaaccggcattccatgtctttacctgaagtaattatccaatgcttagcaacaaatttagattcaggactttgaaatactttaga |
107 |
Q |
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| T |
32000005 |
ccaagaatatattaaacaaccggcattccatgtctttacctgaagtaattatccaatgcttagcaacaaatttagattcaggactttgaaatactttaga |
32000104 |
T |
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| Q |
108 |
aacctgtgatcaataacaaaggataatccaaaattnnnnnnntgagcactacaaaaataatatatgaattgctaaggtnnnnnnngtgtaatgaattggt |
207 |
Q |
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| T |
32000105 |
aacctgtgatcaataacaaaggataatccaaaattaaaaaaatgtgcactacaaaaataatatatgaattgctaaggtaaaagaagtgtaatgaattgct |
32000204 |
T |
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| Q |
208 |
aaggtaaaa-aataaatgaattgttgcacatggtgagtaaggattgtagtacaatacaaattaaagagcatggtcaaaactttaatttcaaaactttcca |
306 |
Q |
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| T |
32000205 |
aaggtaaaaaaataaataaattgttgcacatggtgagtaaggattgtagtacaatacaaattaaagaccatggtcaaaactttaatttcaaaactttcca |
32000304 |
T |
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| Q |
307 |
ttttattgttgatataaatattgattgtgaaaatgcaagaacatacatagtaatagtatggtcagatatgccttgcagtgttaggtggttggaaagactg |
406 |
Q |
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| T |
32000305 |
ttttattgttgatataaatattgattgtgaaaatgcaagaacacacatagtaatagtatggtcagatatgccttgcagtgttaggtggttggaaagactg |
32000404 |
T |
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| Q |
407 |
tgtttcatgtacggaggtcagactcagatatatatac |
443 |
Q |
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| T |
32000405 |
tgtttcatgtacggaggtcagactcagatatatatac |
32000441 |
T |
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