View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16238_low_4 (Length: 401)
Name: NF16238_low_4
Description: NF16238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16238_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 9 - 386
Target Start/End: Original strand, 13724865 - 13725242
Alignment:
| Q |
9 |
acatcatcaataaactttgcatttgtgatttgatctgtccaaagtggcattgcaatcaccggaactccaacactcaaagcttccaatgtcgagttccaac |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13724865 |
acatcaacaataaactttgcatttgtgatttgatctgtccaaagtggcattgcaatcaccagaactccaacactcaaagcttccaatgtcgagttccaac |
13724964 |
T |
|
| Q |
109 |
cacaatgtgttacaaaacaaccaacagcttcatgtgttaacacttgtagttgtgaacaccaattgacaattaaacctttctctgtcgatgactccaacat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13724965 |
cacaatgtgttacaaaacaaccaacagcttcatgtgttaacacttgtagttgtgaacaccaattgacaattaaacctttctctatcgatgactccaacat |
13725064 |
T |
|
| Q |
209 |
ttcctttggaactttactcttttctgaatctctaacaacccatatgaaatacattccacaatctcttaatccataagccatttcctttgtttggtcttca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13725065 |
ttcctttggaactttactcttttctgaatctctaacaacccataggaaatacattccacaatctcttaatccataagccatttcctttgtttggtcttca |
13725164 |
T |
|
| Q |
309 |
ctaagaccagccaagctcccaaaagaaacatacacaactgagtcttttggtttattatccagccatttgatgcaagct |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13725165 |
ctaagaccagccaagctcccaaaagaaacatacacaactgagtcttttggtttattatccagccatttgatgcaagct |
13725242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 9 - 384
Target Start/End: Original strand, 13695535 - 13695907
Alignment:
| Q |
9 |
acatcatcaataaactttgcatttgtgatttgatctgtccaaagtggcattgcaatcaccggaactccaacactcaaagcttccaatgtcgagttccaac |
108 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||||||| ||||||||| | |||||||||||||||||| || ||||||| |
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|
| T |
13695535 |
acatcaacaataaactttgcatttgtaatttgatcagtccaaattggcatcgcaatcatcggaactcctaaactcaaagcttccaatgttgaattccaac |
13695634 |
T |
|
| Q |
109 |
cacaatgtgttacaaaacaaccaacagcttcatgtgttaacacttgtagttgtgaacaccaattgacaattaaacctttctctgtcgatgactccaacat |
208 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||| ||||||| |||||| | || || |||||||||||| ||| ||| | | |
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|
| T |
13695635 |
cacaatgtgttacaaaacatccaacagcttcatgtgcaaacacttctagttgttgacaccatgtcactatcaaacctttctct---aatgtttccgaaaa |
13695731 |
T |
|
| Q |
209 |
ttcctttggaactttactcttttctgaatctctaacaacccatatgaaatacattccacaatctcttaatccataagccatttcctttgtttggtcttca |
308 |
Q |
| |
|
| |||| |||| |||||| ||||| || ||||||||||||||||| ||| | | ||||| | | | || |||||||| ||||||| |||||||||||| |
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|
| T |
13695732 |
tcccttcggaattttacttttttcagattctctaacaacccatataaaaaatctgccacagtttttcaaaccataagctatttcctcagtttggtcttca |
13695831 |
T |
|
| Q |
309 |
ctaagaccagccaagctcccaaaagaaacatacacaactgagtcttttggtttattatccagccatttgatgcaag |
384 |
Q |
| |
|
||||||| | | ||| || || || |||||||||||||| |||||||||||| ||| | |||||||||||||| |
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|
| T |
13695832 |
ctaagacttgacctgcttccgaacgatacatacacaactgaaccttttggtttatcatctaaccatttgatgcaag |
13695907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 9 - 383
Target Start/End: Original strand, 13670148 - 13670519
Alignment:
| Q |
9 |
acatcatcaataaactttgcatttgtgatttgatctgtccaaagtggcattgcaatcaccggaactccaacactcaaagcttccaatgtcgagttccaac |
108 |
Q |
| |
|
|||||| |||||| ||||||||| || | |||||| |||||||||||||||||||||| |||||| || | |||||||||||||| ||||||||||||| |
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|
| T |
13670148 |
acatcagcaataagctttgcattcgtaacttgatcggtccaaagtggcattgcaatcaacggaacaccgatgctcaaagcttccaacgtcgagttccaac |
13670247 |
T |
|
| Q |
109 |
cacaatgtgttacaaaacaaccaacagcttcatgtgttaacacttgtagttgtgaacaccaattgacaattaaacctttctctgtcgatgactccaacat |
208 |
Q |
| |
|
|||||||||| ||||||||||| | ||||||||||||||||||| ||||||| |||||| | || ||||||||||||| | ||||| ||| |||| |
|
|
| T |
13670248 |
cacaatgtgtcacaaaacaacctaaagcttcatgtgttaacactaaaagttgtggacaccatgtcactattaaacctttct---ttgatgattcc-acat |
13670343 |
T |
|
| Q |
209 |
ttcc-tttggaa-ctttactcttttctgaatctctaacaacccatatgaaatacattccacaatctcttaatccataagccatttcctttgtttggtctt |
306 |
Q |
| |
|
|| ||||||| ||| ||| | ||| || |||||||||||||||| |||||| || ||| |||| ||||||| |||| | ||| | |||||| |||| |
|
|
| T |
13670344 |
acccatttggaagcttaact-tgttcagattctctaacaacccataagaaataactttcactatcttttaatcctaaagctagttcttgtgtttgctctt |
13670442 |
T |
|
| Q |
307 |
cactaagaccagccaagctcccaaaagaaacatacacaactgagtcttttggtttattatccagccatttgatgcaa |
383 |
Q |
| |
|
||||||||||||||| ||| ||||| || |||||||||||||| ||||||| || | || ||||||||||||||| |
|
|
| T |
13670443 |
cactaagaccagccatgctaccaaatgagacatacacaactgaaccttttggcttctcatttagccatttgatgcaa |
13670519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 9 - 383
Target Start/End: Complemental strand, 13688465 - 13688094
Alignment:
| Q |
9 |
acatcatcaataaactttgcatttgtgatttgatctgtccaaagtggcattgcaatcaccggaactccaacactcaaagcttccaatgtcgagttccaac |
108 |
Q |
| |
|
|||||| |||||| ||||||||| || | |||||| |||||||| ||||||||||||| ||||| || | |||||||||||||| ||||||||||||| |
|
|
| T |
13688465 |
acatcagcaataagctttgcattcgtaacttgatcggtccaaagcggcattgcaatcagtggaacaccgatgctcaaagcttccaacgtcgagttccaac |
13688366 |
T |
|
| Q |
109 |
cacaatgtgttacaaaacaaccaacagcttcatgtgttaacacttgtagttgtgaacaccaattgacaattaaacctttctctgtcgatgactccaacat |
208 |
Q |
| |
|
|||||||||| ||||||||||| | ||||||||||||||||||| ||||||||| |||||| | || ||||||||||||| | ||||| ||| |||| |
|
|
| T |
13688365 |
cacaatgtgtcacaaaacaacctaaagcttcatgtgttaacactagtagttgtggacaccatgtcactattaaacctttct---ttgatgattcc-acat |
13688270 |
T |
|
| Q |
209 |
ttcc-tttggaactttactcttttctgaatctctaacaacccatatgaaatacattccacaatctcttaatccataagccatttcctttgtttggtcttc |
307 |
Q |
| |
|
|| ||||||| ||| | | ||| | |||||||||||||||| |||||| || ||| |||| ||||||| |||| | ||| | |||||| ||||| |
|
|
| T |
13688269 |
acccttttggaagcttattttgttcatattctctaacaacccataagaaataactttcactatcttttaatcctaaagctagttcttgtgtttgctcttc |
13688170 |
T |
|
| Q |
308 |
actaagaccagccaagctcccaaaagaaacatacacaactgagtcttttggtttattatccagccatttgatgcaa |
383 |
Q |
| |
|
||||||||| |||| ||| ||||| ||| ||||||||||||| |||| || |||| || |||||||||||||||| |
|
|
| T |
13688169 |
actaagaccggccatgctaccaaatgaagcatacacaactgaacctttaggcttatcattcagccatttgatgcaa |
13688094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 13694581 - 13694421
Alignment:
| Q |
9 |
acatcatcaataaactttgcatttgtgatttgatctgtccaaagtggcattgcaatcaccggaactccaacactcaaagcttccaatgtcgagttccaac |
108 |
Q |
| |
|
|||||| |||||||||||||||| || |||||| |||||||| ||||||||||||| || || |||| |||||||||||||| ||||||||||||| |
|
|
| T |
13694581 |
acatcagcaataaactttgcattcgtagcttgatcggtccaaagcggcattgcaatcaatggtacaccaatgctcaaagcttccaacgtcgagttccaac |
13694482 |
T |
|
| Q |
109 |
cacaatgtgttacaaaacaaccaacagcttcatgtgttaacacttgtagttgtgaacacca |
169 |
Q |
| |
|
|||| ||||| |||||||| | |||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
13694481 |
cacagtgtgtcacaaaacatgccacagcttcatgtgttaacacttctaattgtggacacca |
13694421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 30853298 - 30853433
Alignment:
| Q |
9 |
acatcatcaataaactttgcatttgtgatttgatctgtccaaagtggcattgcaatcaccggaactccaacactcaaagcttccaatgtcgagttccaac |
108 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||||||| ||| |||||||||||| | |||||||| | || | |||||||||||| || ||||||| |
|
|
| T |
30853298 |
acatcttcaataaactttgcattggtggattgatctgaccattgtggcattgcaacaattggaactcctaagctaatagcttccaatgtggaattccaac |
30853397 |
T |
|
| Q |
109 |
cacaatgtgttacaaaacaaccaacagcttcatgtg |
144 |
Q |
| |
|
||||||||||||||||||| || | || |||||||| |
|
|
| T |
30853398 |
cacaatgtgttacaaaacaccctatagattcatgtg |
30853433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 30858611 - 30858688
Alignment:
| Q |
50 |
aagtggcattgcaatcaccggaactccaacactcaaagcttccaatgtcgagttccaaccacaatgtgttacaaaaca |
127 |
Q |
| |
|
|||||||||||||| | |||||||| | |||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
30858611 |
aagtggcattgcaacaattggaactcctatactcaaagcttccaatgtggaattccaaccacaatgtgttacaaaaca |
30858688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 30817180 - 30817227
Alignment:
| Q |
80 |
actcaaagcttccaatgtcgagttccaaccacaatgtgttacaaaaca |
127 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
30817180 |
actcaaagcttccaatgtggaattccaaccacaatgtgttacaaaaca |
30817227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 30840391 - 30840431
Alignment:
| Q |
87 |
gcttccaatgtcgagttccaaccacaatgtgttacaaaaca |
127 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
30840391 |
gcttccaatgtggagttccatccacaatgtgttacaaaaca |
30840431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 30844900 - 30844940
Alignment:
| Q |
87 |
gcttccaatgtcgagttccaaccacaatgtgttacaaaaca |
127 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
30844900 |
gcttccaatgtggagttccatccacaatgtgttacaaaaca |
30844940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 15465747 - 15465789
Alignment:
| Q |
102 |
ttccaaccacaatgtgttacaaaacaaccaacagcttcatgtg |
144 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
15465747 |
ttccaaccacaatgtgtcacaaaacatccaacagcatcatgtg |
15465789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 15473890 - 15473932
Alignment:
| Q |
102 |
ttccaaccacaatgtgttacaaaacaaccaacagcttcatgtg |
144 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
15473890 |
ttccaaccacaatgtgtcacaaaacatccaacagcatcatgtg |
15473932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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