View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16238_low_6 (Length: 315)
Name: NF16238_low_6
Description: NF16238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16238_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 21 - 305
Target Start/End: Original strand, 53513536 - 53513820
Alignment:
| Q |
21 |
gactaacattcaacattaagaaaatatatatttggatccaactgattaatcaattgattgtttttaatagagcatatatgcatattttagggttgaacca |
120 |
Q |
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| T |
53513536 |
gactaacattcaacattaagaaaatatatatttggatccaactgattaatctattgattgtttttaatagagtatatatgcatattttagggttgaacca |
53513635 |
T |
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| Q |
121 |
tttacagtttttaatagtttctaaccgtgtaaactagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtt |
220 |
Q |
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| T |
53513636 |
tttacagtttttaataatttctaaccgtgtaaactagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtt |
53513735 |
T |
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| Q |
221 |
tcactgatagaccatctccagaacatttggatacagaagtaaagttgggcttagcatcaggaaatacagtctcaccaccttcttc |
305 |
Q |
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| T |
53513736 |
tcactgatagaccatctccagaacatttggatacagaagtaaagttgggctgagcatcaggaaatacagtctcaccaccttcttc |
53513820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 48 - 305
Target Start/End: Original strand, 53509954 - 53510211
Alignment:
| Q |
48 |
atatttggatccaactgattaatcaattgattgtttttaatagagcatatatgcatattttagggttgaaccatttacagtttttaatagtttctaaccg |
147 |
Q |
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| T |
53509954 |
atatttagatccaactcattaatctatagattgtgtttaatagagaatgtatacatattttacagttgaacgagttgcggtttttaatagattctaaccg |
53510053 |
T |
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| Q |
148 |
tgtaaactagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtttcactgatagaccatctccagaacatt |
247 |
Q |
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| T |
53510054 |
tgtaaactagaagtatcaagtgtgccatctggcttcatgctccgaaacagcagagcatcacccatttttggtttcactgatagacccttttcaggatatt |
53510153 |
T |
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| Q |
248 |
tggatacagaagtaaagttgggcttagcatcaggaaatacagtctcaccaccttcttc |
305 |
Q |
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| T |
53510154 |
tggatacagaatttatgttaggcttagcattaggaaatacagtctcaccaccttcttc |
53510211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 136 - 305
Target Start/End: Original strand, 53523948 - 53524120
Alignment:
| Q |
136 |
agtttctaaccgtgtaaactagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatttttggtttcactgatagaccat |
235 |
Q |
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||||||||||| ||||| |||| |||||||||| |||||||||||| | |||||||||||||||||| ||||||||||| ||||||||| || ||| | |
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| T |
53523948 |
agtttctaaccatgtaagctagctgtatctagtgagccatctggcttaacgctccaaaacagcagagcatcgcccattttcggtttcactactaaaccct |
53524047 |
T |
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| Q |
236 |
ctccag---aacatttggatacagaagtaaagttgggcttagcatcaggaaatacagtctcaccaccttcttc |
305 |
Q |
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| T |
53524048 |
ttccaggatgatatttggatacagaattaaagttgggcttagcattaggaaatacagtctcaccaccttcttc |
53524120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 53547540 - 53547659
Alignment:
| Q |
114 |
tgaaccatttacagtttttaatagtttctaaccgtgtaaactagaagtatctagtgtgccatctggcttcatgctccaaaacagcagagcgtcgcccatt |
213 |
Q |
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||||||| ||| ||| ||||||||| ||||||||||||||| || | |||||||||| |||||||| |||||||||||||||||||||| || |||||| |
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| T |
53547540 |
tgaaccagttaaagtatttaatagtccctaaccgtgtaaactggatgcatctagtgtggcatctggcctcatgctccaaaacagcagagcatcacccatt |
53547639 |
T |
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| Q |
214 |
tttggtttcactgatagacc |
233 |
Q |
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|||||||||| ||||||||| |
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| T |
53547640 |
tttggtttcagtgatagacc |
53547659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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