View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16238_low_7 (Length: 279)

Name: NF16238_low_7
Description: NF16238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16238_low_7
NF16238_low_7
[»] chr5 (21 HSPs)
chr5 (6-262)||(30434635-30434888)
chr5 (6-262)||(29852112-29852365)
chr5 (11-259)||(29871004-29871249)
chr5 (1-259)||(30339565-30339820)
chr5 (12-262)||(30243409-30243656)
chr5 (1-262)||(30748451-30748709)
chr5 (6-262)||(30482217-30482470)
chr5 (81-262)||(30059245-30059423)
chr5 (85-262)||(30398957-30399131)
chr5 (80-260)||(30678210-30678387)
chr5 (168-262)||(4380630-4380724)
chr5 (1-59)||(30678477-30678535)
chr5 (6-59)||(30059101-30059154)
chr5 (167-262)||(30205481-30205576)
chr5 (6-56)||(4380477-4380527)
chr5 (165-255)||(30203119-30203209)
chr5 (166-262)||(29709946-29710042)
chr5 (82-135)||(30205399-30205452)
chr5 (184-253)||(30474363-30474432)
chr5 (231-262)||(30714471-30714502)
chr5 (4-56)||(30205252-30205304)
[»] chr4 (3 HSPs)
chr4 (84-262)||(20297640-20297818)
chr4 (5-59)||(20297912-20297966)
chr4 (82-135)||(20303720-20303773)
[»] chr7 (2 HSPs)
chr7 (79-257)||(26706218-26706393)
chr7 (1-56)||(26706071-26706126)
[»] chr1 (1 HSPs)
chr1 (82-135)||(7582889-7582942)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 6 - 262
Target Start/End: Original strand, 30434635 - 30434888
Alignment:
Q  6 tagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgagagaaaaaagttactaacagagattgaagagaagtaaggttt 105  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |  ||||||||||| ||||| |||||||||||||||||||||    
T  30434635 tagagctcgaagggattgaagaccttcccagttttgctctggtaaggactccaattgtggtaaaaaagttacaaacagggattgaagagaagtaaggttt 30434734  T
Q  106 ttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacctcagtaactcat 205  Q
    ||||||||||||||||| ||||||||||||   |||||||    || |||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  30434735 ttgaacatctcctctggtaaggatgttatt---ccttcaccactatttagggtaagctgagtaagaccacggaaggtagagattgacctcagtaactcat 30434831  T
Q  206 tgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtt 262  Q
    |||||| | |||  ||| |||||  ||||||||||||||||||||||||||||||||    
T  30434832 tgttacgtccatcgacaccgaggtctttaagagatggaagacatggcagtccaagtt 30434888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 6 - 262
Target Start/End: Original strand, 29852112 - 29852365
Alignment:
Q  6 tagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgagagaaaaaagttactaacagagattgaagagaagtaaggttt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| || |||| | |||||||||||||||||||||||||    
T  29852112 tagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgtgggaaacaatttacaaccagagattgaagagaagtaaggttt 29852211  T
Q  106 ttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacctcagtaactcat 205  Q
    |||||||||||||||||||||||||   ||||||    || ||||| |||   |||||| ||||||||||||||||||||||||||||||||||||||||    
T  29852212 ttgaacatctcctctgggaaggatg---ttattctgaaaccgtcatgtagccaaagctttgtaagaccacggaaggtagagattgacctcagtaactcat 29852308  T
Q  206 tgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtt 262  Q
    |||||||| |  |||||  ||| | ||| ||||||||||||||||||||||||||||    
T  29852309 tgttacatcccaatacatggagcagtttcagagatggaagacatggcagtccaagtt 29852365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 29871004 - 29871249
Alignment:
Q  11 ttcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgagagaaaaaagttactaacagagattgaagagaagtaaggtttttgaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||| ||||||||||||||||||||||    
T  29871004 ttcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgagagaaacaatatacaaacagagatagaagagaagtaaggtttttgaa 29871103  T
Q  111 catctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacctcagtaactcattgtta 210  Q
    |||| |||||||||||||||   |||||||||||| ||||  ||||  ||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  29871104 catcccctctgggaaggatg---ttattccttcaccgtcacttagggcaagctgagtaagaccacaaaaggtagagattgacctcagtaactcattgtta 29871200  T
Q  211 cattcatatacagcgaggaatttaagagatggaagacatggcagtccaa 259  Q
    |||  ||   || |||||  |||||||||||||||||||||||||||||    
T  29871201 catggatcggcaacgaggtctttaagagatggaagacatggcagtccaa 29871249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 30339820 - 30339565
Alignment:
Q  1 atctctagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgagagaaaaaagttactaacagagattgaagagaagtaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    ||  | | |   |||||||||||||||||||||    
T  30339820 atctgtagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaactcattacaactaatgatagacagagattgaagagaagtaa 30339721  T
Q  101 ggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacctcagtaa 200  Q
    |||||||||||||| ||||||||||||||||||||   |||||||  ||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  30339720 ggtttttgaacatcccctctgggaaggatgttatt---ccttcaccttcatataagataagctgagtaagaccacggaaggtagagattgacctcagtaa 30339624  T
Q  201 ctcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaa 259  Q
    ||||||||||||| | |  |||  ||||  |||||||||||||||||||||||||||||    
T  30339623 ctcattgttacatccctcaacatagaggtctttaagagatggaagacatggcagtccaa 30339565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 30243656 - 30243409
Alignment:
Q  12 tcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgagagaaaaaagttactaacagagattgaagagaagtaaggtttttgaac 111  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||| | ||||  | ||||  ||||||||||||||||||||||||||||||||    
T  30243656 tcgaagggattgaagaccttcccaatttgtctctggtaaggactccaattgtgggaaactatttacagacagagattgaagagaagtaaggtttttgaac 30243557  T
Q  112 atctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacctcagtaactcattgttac 211  Q
    ||| ||||||||||||||||   ||||||   || || |  |||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30243556 atcccctctgggaaggatgt---tattccgaaaccgtgaattagtttaagctgagtaagaccacggaaggtagagattgacctcagtaactcattgttac 30243460  T
Q  212 attcatatacagcgaggaatttaagagatggaagacatggcagtccaagtt 262  Q
    ||||  |||||  ||||  ||||||||||||||||||||||||||||||||    
T  30243459 attcccatacaaagaggtctttaagagatggaagacatggcagtccaagtt 30243409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 30748451 - 30748709
Alignment:
Q  1 atctctagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgagagaaaaaagttactaacagagattgaagagaagtaa 100  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | |    || || | |   |||||||||||||||||||||    
T  30748451 atctgtagagctcgaagggattgaagaccttcccagttttgctctggtaaggactccaactcattacaacaattgatacacagagattgaagagaagtaa 30748550  T
Q  101 ggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacctcagtaa 200  Q
    |||||||||||||||||||||| ||||||||||||   |||||||    || |||| |||||| ||||||||||||||||||||||||||||||||||||    
T  30748551 ggtttttgaacatctcctctggtaaggatgttatt---ccttcaccactatttagggtaagctgagtaagaccacggaaggtagagattgacctcagtaa 30748647  T
Q  201 ctcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtt 262  Q
    |||||||||||||||  ||| |  |||| |||||||||||||||||||||||||||||||||    
T  30748648 ctcattgttacattcccataaatggagggatttaagagatggaagacatggcagtccaagtt 30748709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 6 - 262
Target Start/End: Original strand, 30482217 - 30482470
Alignment:
Q  6 tagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgagagaaaaaagttactaacagagattgaagagaagtaaggttt 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||  ||  ||||  |||| |||||||| |||||||||||    
T  30482217 tagagctcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgtgggaaccaatctacttccagatattgaagacaagtaaggttt 30482316  T
Q  106 ttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacctcagtaactcat 205  Q
    ||||||||| ||||||||||||||||||||   |||||||  ||   |||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  30482317 ttgaacatcccctctgggaaggatgttatt---ccttcaccctccattagggtaagctgagtaagaccacggaaggtagagattgacctcagtaactcat 30482413  T
Q  206 tgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtt 262  Q
    |||||||| |||  |||  ||||  || ||||||||||||| |||||||||||||||    
T  30482414 tgttacatccatccacatagaggccttcaagagatggaagagatggcagtccaagtt 30482470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 81 - 262
Target Start/End: Original strand, 30059245 - 30059423
Alignment:
Q  81 cagagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaag 180  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||   ||| || || ||||| ||||||||||||||||    
T  30059245 cagagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttat---tccttcacccccatttacgaaaagctgagtaagaccacggaag 30059341  T
Q  181 gtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtt 262  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||| |||||||||||||||||||||||||||||||||    
T  30059342 gtagagattgacctcagtaactcattgttacattccgatacagtgagggatttaagagatggaagacatggcagtccaagtt 30059423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 85 - 262
Target Start/End: Original strand, 30398957 - 30399131
Alignment:
Q  85 gattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtag 184  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||   |||  || || || ||||  ||||| ||||||||||||||||||||    
T  30398957 gattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttatt---cctctaccgtaatctagggaaagctcagtaagaccacggaaggtag 30399053  T
Q  185 agattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtt 262  Q
    ||||||||||||||||||||||||||||| |  |||||  |||| |||||||||||||||||||||||| ||||||||    
T  30399054 agattgacctcagtaactcattgttacatcccaatacatagagggatttaagagatggaagacatggcactccaagtt 30399131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 80 - 260
Target Start/End: Complemental strand, 30678387 - 30678210
Alignment:
Q  80 acagagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaa 179  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||   || || |||||||  ||||| |||||||||||||||    
T  30678387 acagagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttatt---ccgaaaccgttatatagggaaagctgagtaagaccacggaa 30678291  T
Q  180 ggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaag 260  Q
    |||||||||||||||||||||||||||||||||| |  |||   ||||   ||||||||||||||||||||||||||||||    
T  30678290 ggtagagattgacctcagtaactcattgttacatccccatatctcgagttctttaagagatggaagacatggcagtccaag 30678210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 168 - 262
Target Start/End: Original strand, 4380630 - 4380724
Alignment:
Q  168 aagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtt 262  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| | |  ||| |||||  ||||||||||||| ||||||||||||||||||    
T  4380630 aagaccacgaaaggtagagattgacctcagtaactcattgttacatccctcaacaacgaggtgtttaagagatggatgacatggcagtccaagtt 4380724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 30678535 - 30678477
Alignment:
Q  1 atctctagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaa 59  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30678535 atctttagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaa 30678477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 30059101 - 30059154
Alignment:
Q  6 tagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaa 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30059101 tagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaa 30059154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 262
Target Start/End: Original strand, 30205481 - 30205576
Alignment:
Q  167 taagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtt 262  Q
    |||||||||  ||| |||||||||||||||| ||||||||||||||| |  ||||| | |||  ||||||||||  ||||||||||||||||||||    
T  30205481 taagaccacaaaagctagagattgacctcagcaactcattgttacatcccaatacatctaggtttttaagagatacaagacatggcagtccaagtt 30205576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 4380477 - 4380527
Alignment:
Q  6 tagagttcgaagggattgaagaccttcccaattttgctctggtaaggactc 56  Q
    |||||| | |||||||||||||||||| |||||||||||||||||||||||    
T  4380477 tagagtcctaagggattgaagaccttctcaattttgctctggtaaggactc 4380527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 255
Target Start/End: Original strand, 30203119 - 30203209
Alignment:
Q  165 agtaagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagt 255  Q
    ||||||||||  |||| ||||||| |||||||||||||||||||||||||||| ||||   |||  ||||| | |||||||||||| ||||    
T  30203119 agtaagaccatagaagctagagatcgacctcagtaactcattgttacattcatttacataaaggtttttaacatatggaagacatgacagt 30203209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 29710042 - 29709946
Alignment:
Q  166 gtaagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtt 262  Q
    ||||||||||   ||||||||||||| ||||||||||||||||||||| |  | ||| |||||  | ||||||| |||||||||| |||| ||||||    
T  29710042 gtaagaccacatgaggtagagattgatctcagtaactcattgttacatcccgaaacatcgaggtctataagagacggaagacatgacagttcaagtt 29709946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 30205399 - 30205452
Alignment:
Q  82 agagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttatt 135  Q
    |||| ||||||| |||||||||||||||||||| | || |||||||||||||||    
T  30205399 agagcttgaagacaagtaaggtttttgaacatcccgtccgggaaggatgttatt 30205452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 30474363 - 30474432
Alignment:
Q  184 gagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggca 253  Q
    |||||||| ||||||||||||||||||||| || |||||  ||||  |||||| |||||||| |||||||    
T  30474363 gagattgatctcagtaactcattgttacatccaaatacaatgaggtctttaagggatggaaggcatggca 30474432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 262
Target Start/End: Complemental strand, 30714502 - 30714471
Alignment:
Q  231 tttaagagatggaagacatggcagtccaagtt 262  Q
    ||||||||||||||||||||||||||||||||    
T  30714502 tttaagagatggaagacatggcagtccaagtt 30714471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 30205252 - 30205304
Alignment:
Q  4 tctagagttcgaagggattgaagaccttcccaattttgctctggtaaggactc 56  Q
    ||||||||||| |||||||| |||||||||||| ||| || |||||| |||||    
T  30205252 tctagagttcggagggattgcagaccttcccaaatttcctttggtaaagactc 30205304  T

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Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 84 - 262
Target Start/End: Complemental strand, 20297818 - 20297640
Alignment:
Q  84 agattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggta 183  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| ||||  ||||  ||||| ||||||||||||||| |||    
T  20297818 agattgaagagaagtaaggtttttgaacatcccatctgggaaggatgttattatttcttcactgtcaagtagggaaagctgagtaagaccacggaaagta 20297719  T
Q  184 gagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtt 262  Q
    |||||||| |||||||||||||||||||||  ||  ||| ||||| |||||||||||||||||||||||| ||||||||    
T  20297718 gagattgatctcagtaactcattgttacatggatcgacatcgagggatttaagagatggaagacatggcattccaagtt 20297640  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 20297966 - 20297912
Alignment:
Q  5 ctagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaa 59  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20297966 ctagagttcgaagggattgaagaccttcccaaatttgctctggtaaggactccaa 20297912  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 20303773 - 20303720
Alignment:
Q  82 agagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttatt 135  Q
    |||| ||||||| ||||||||||| |||||||| ||| | ||||||||||||||    
T  20303773 agagtttgaagacaagtaaggtttatgaacatccccttttggaaggatgttatt 20303720  T

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Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 79 - 257
Target Start/End: Original strand, 26706218 - 26706393
Alignment:
Q  79 aacagagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacgga 178  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||| | || ||||||| |||||| |||||||||||| |    
T  26706218 aacagagattgaagagaagtaaggtttttgaacatcccctctgggaaggatg---ttattccttcgccgttatatagggtaagctcagtaagaccacgaa 26706314  T
Q  179 aggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtcc 257  Q
    |||||| |||||||||||||||||||||||||||| |  | |||  |||| ||||||||||||||||||||||||||||    
T  26706315 aggtagggattgacctcagtaactcattgttacatcccgaaacattgagggatttaagagatggaagacatggcagtcc 26706393  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 26706071 - 26706126
Alignment:
Q  1 atctctagagttcgaagggattgaagaccttcccaattttgctctggtaaggactc 56  Q
    ||||||||||| | |||||||||||||||||||||  ||| |||||||| ||||||    
T  26706071 atctctagagtcctaagggattgaagaccttcccacattttctctggtagggactc 26706126  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 7582942 - 7582889
Alignment:
Q  82 agagattgaagagaagtaaggtttttgaacatctcctctgggaaggatgttatt 135  Q
    |||||||| ||| |||||||||||   |||||||||| ||||||||||||||||    
T  7582942 agagattggagacaagtaaggtttccaaacatctcctttgggaaggatgttatt 7582889  T

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