View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16238_low_8 (Length: 261)
Name: NF16238_low_8
Description: NF16238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16238_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 1936542 - 1936797
Alignment:
| Q |
1 |
ctggcatcatcattaaatccataaaactgatgtattgagactcctgtcctaaacatttaatacnnnnnnnn-cacgagtttaacacaaaaaagagagaat |
99 |
Q |
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| T |
1936542 |
ctggcatcatcattaaatccataaaactgatgtattgagactcgtgtcctaaacatttaacacaaaaaaaaacacgagtttaacacaaaaaagagagaat |
1936641 |
T |
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| Q |
100 |
ttagcnnnnnnnnnn--tagagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattttgagca |
197 |
Q |
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| T |
1936642 |
ttagcacaaaaaaaaaatagagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattttgagca |
1936741 |
T |
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| Q |
198 |
catgtttatgtgaacatcattgtttcatttcgagcacatgctcaattgttcttctc |
253 |
Q |
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| T |
1936742 |
catgtttatgtgaacatcattgtttcatttcgagcacatgctcaattgttcttctc |
1936797 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 34819621 - 34819695
Alignment:
| Q |
117 |
gagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattt |
191 |
Q |
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| T |
34819621 |
gagaattgattcataaacatgcttatgtggcaaaccactcttgtaccactcatatgtggtattttttattaattt |
34819695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 37863950 - 37864024
Alignment:
| Q |
117 |
gagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattt |
191 |
Q |
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| T |
37863950 |
gagaattgattcataaacatacttatgtggcaaaccactcttgtaccactcatatgtggtattttttattaattt |
37864024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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