View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16239_high_2 (Length: 210)
Name: NF16239_high_2
Description: NF16239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16239_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 18665361 - 18665539
Alignment:
| Q |
17 |
cagtttgaccagatccataataaattcgctctgaactagcatgattattcggaaaatatccacttgcattttgctgatgaaacctaggacgattttgatg |
116 |
Q |
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| T |
18665361 |
cagtttgaccagatccataataaattcgctctgaactagcatgattattcggaaaatatccacttgcattttgctgatgaaacctaggacaattttgatg |
18665460 |
T |
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| Q |
117 |
gtaatccgaagaatcattagcttgataatcccacctttcagcagcggtggaaatattccttgatgtattagaccctttg |
195 |
Q |
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| T |
18665461 |
gtaatccgaagaatcattagcttgataatcccacctttcagcagcggtggaaatattccttgatgtattagaccctttg |
18665539 |
T |
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Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 15078467 - 15078289
Alignment:
| Q |
17 |
cagtttgaccagatccataataaattcgctctgaactagcatgattattcggaaaatatccacttgcattttgctgatgaaacctaggacgattttgatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15078467 |
cagtttgaccagatccataataaattcgctctgaactagcatgattattcggaaaatatccacttgcattttgctgatgaaacctaggacgattttgctg |
15078368 |
T |
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| Q |
117 |
gtaatccgaagaatcattagcttgataatcccacctttcagcagcggtggaaatattccttgatgtattagaccctttg |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15078367 |
gtaatccgaagaatcattagcttgataatcccacctttcagcagcggtggaaatatcccttgatgtattagaccctttg |
15078289 |
T |
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