View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16239_low_2 (Length: 421)
Name: NF16239_low_2
Description: NF16239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16239_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 42030015 - 42030212
Alignment:
| Q |
1 |
ttgaaggtctaatgttcatttcaaagtcgtatgcaaaccaaatgcttccgttatttcatcatcacatacacagaggagaaaaccaagtatctcaattcct |
100 |
Q |
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| T |
42030015 |
ttgaaggtctaatgttcatttcaaagtcgtatgcaaaccaaatgcttccgttatttcatcatcacatacatagaggagaaaaccaagtatctcaattcct |
42030114 |
T |
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| Q |
101 |
actatgttaagtgaaaaagaaaatgacttataacgtccgattgctggcttttctcatgacaaacaatgcatacatacctattgtccaccagaatgcaa |
198 |
Q |
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| T |
42030115 |
actatgttaagtgaaaaagaaaatgacttataacgtccgattgctggcttttctcatgacaaccaatgcatacatacctattgtccaccagaatgcaa |
42030212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 228 - 415
Target Start/End: Original strand, 42030237 - 42030434
Alignment:
| Q |
228 |
taggttctaaaataaattacacagtacataaaaattgatctcacgccacttaaaccaacccccttgttgtc----------acgccagattacatatatg |
317 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
42030237 |
tagggtctaaaataaattacacagtacataaaaattgatctcacgccacttaacccaacccccttgttgtccacgcggaccacgccagattacatatatg |
42030336 |
T |
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| Q |
318 |
gtaacgctcttaccccttgtccacgccaccttatattacgctcataaaccctttgtctgtcatcaataacacaaaaccctcttcacttttcttctctc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42030337 |
gtaacgctcttaccccttgtccacgccaccttatattacgctcataaaccctttgtctgtcatcaatatcacaaaaccctcttcacttttcttctctc |
42030434 |
T |
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