View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16239_low_3 (Length: 220)
Name: NF16239_low_3
Description: NF16239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16239_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 34019058 - 34019221
Alignment:
| Q |
39 |
gggacatattttgtggtgtttgctggatgtgggtctgtagcagtggacaagatctatgggtctgtcacatttccaggggtatgtatcacttgggggctta |
138 |
Q |
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| T |
34019058 |
gggacatattttgtggtgtttgctggatgtgggtctgtagcagtggacaagatctatgggtctgtcacatttccaggggtatgtatcacttgggggctta |
34019157 |
T |
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| Q |
139 |
ttgtaatggtcatgtcttactctgttggtcatatctctggaggacatttcaaccctgctgttac |
202 |
Q |
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| T |
34019158 |
ttgtaatggtcatgtcttactctgttggtcatatctctggaggacatttcaaccctgctgttac |
34019221 |
T |
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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 1704224 - 1704064
Alignment:
| Q |
42 |
acatattttgtggtgtttgctggatgtgggtctgtagcagtggacaagatctatgggtctgtcacatttccaggggtatgtatcacttgggggcttattg |
141 |
Q |
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| T |
1704224 |
acatattttctagtgtttgctgggtgtggtgctgtagcagtaaacaagatccatggctctatcacttttccagggatttgcatcacttgggggttgattg |
1704125 |
T |
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| Q |
142 |
taatggtcatgtcttactctgttggtcatatctctggaggacatttcaaccctgctgttac |
202 |
Q |
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| T |
1704124 |
taacagtcatgtgttactcagttggtcatatctctggaggcctcttcaaccctgctgttac |
1704064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 36262532 - 36262580
Alignment:
| Q |
155 |
ttactctgttggtcatatctctggaggacatttcaaccctgctgttact |
203 |
Q |
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| T |
36262532 |
ttactctcttggtcatatctctggtgctcatttcaatcctgctgttact |
36262580 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 5388698 - 5388742
Alignment:
| Q |
155 |
ttactctgttggtcatatctctggaggacatttcaaccctgctgt |
199 |
Q |
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| T |
5388698 |
ttactctgttggtcacatctctggtgctcatttcaaccctgctgt |
5388742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 5402507 - 5402551
Alignment:
| Q |
155 |
ttactctgttggtcatatctctggaggacatttcaaccctgctgt |
199 |
Q |
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| T |
5402507 |
ttactctgttggtcacatctctggtgctcatttcaaccctgctgt |
5402551 |
T |
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