View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_1D_high_18 (Length: 211)
Name: NF1623_1D_high_18
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_1D_high_18 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 3202171 - 3202374
Alignment:
| Q |
8 |
ttggtgttgaagttgagtttatataatctttgatggataaaccagcagagtaacttacatgcacagcaggtagaacatgaacatcagcaattggattgaa |
107 |
Q |
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| T |
3202171 |
ttggtgttgaagttgagtttatataatctttgatggataaaccagcagagtaacttacatgcacagcaggtagaacatgaacatcagcaattggattgaa |
3202270 |
T |
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| Q |
108 |
agcttcatcttcaccattcaaaagtatcatagcagcaccaccagcatctttaactgcttgacctttggctactctttcaaccgatccatcttgctcacac |
207 |
Q |
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| T |
3202271 |
agcttcatcttcaccattcaaaagtatcatagcagcaccaccagcatctttaactgcttgacctttggctactctttcaaccgatccatcttgctcacac |
3202370 |
T |
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| Q |
208 |
acta |
211 |
Q |
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|||| |
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| T |
3202371 |
acta |
3202374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 3208145 - 3208346
Alignment:
| Q |
8 |
ttggtgttgaagttgagtttatataatctttgatggataaaccagcagagtaacttacatgcacagcaggtagaacatgaacatcagcaattggattgaa |
107 |
Q |
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||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208145 |
ttggtgtggaagttgaatttatataatcttggatgtttaaaccagcagagtaacttacatgcacagcaggtagaacatgaacatcagcaattggattgaa |
3208244 |
T |
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| Q |
108 |
agcttcatcttcaccattcaaaagtatcatagcagcaccaccagcatctttaactgcttgacctttggctactctttcaaccgatccatcttgctcacac |
207 |
Q |
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| T |
3208245 |
atcttcaccttcactgttcaaaagtatcatagcagcaccaccggcatctttaactgcttgacctttggctactcttccaacaaacccaccttgctcacac |
3208344 |
T |
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| Q |
208 |
ac |
209 |
Q |
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|| |
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| T |
3208345 |
ac |
3208346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 3216081 - 3216154
Alignment:
| Q |
8 |
ttggtgttgaagttgagtttatataatctttgatggataaaccagcagagtaacttacatgcacagcaggtaga |
81 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
3216081 |
ttggtgttgaagttgagtttatataatctttgatggataaaccagcagagtaacttacaagtgcagcaggtaga |
3216154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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