View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_1D_high_2 (Length: 566)
Name: NF1623_1D_high_2
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_1D_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 42769416 - 42768871
Alignment:
| Q |
1 |
tgaatcttcctacacaacaagcctcaatagcatggactttacaccctcatagctccaccttagaactaattttctttggcactttcgtttcaccttctgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42769416 |
tgaatcttcctacacaacaagcctcaatagcatggactttacaccctcatagctccaccttagaactaattttctttggcactttcatttcaccttctgg |
42769317 |
T |
|
| Q |
101 |
ttgggtcggatttggtatcaaccctacttcaccacaaatgacaggaactaatgctttgatatcatttccagacccaaatacaggacaaatagttcttcta |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769316 |
ttgggttggatttggtatcaaccctacttcaccacaaatgacaggaactaatgctttgatatcatttccagacccaaatacaggacaaatagttcttcta |
42769217 |
T |
|
| Q |
201 |
cctttcatccttgacactactgtaaaactccaaaaatcaccacttctttctcaaccctttgataatatcaacctcctctcttcctctgcagctatgtatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769216 |
cctttcatccttgacactactgtaaaactccaaaaatcaccacttctttctcaaccctttgataatatcaacctcctctcttcctctgcagctatgtatg |
42769117 |
T |
|
| Q |
301 |
gtggcaaaatggcaaccattcataacggtgcgcctattcaaatctacgctaaactcaaactcgaatcgaataaaaccaaaatccaccttgtttggaatag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769116 |
gtggcaaaatggcaaccattcataacggtgcgcctattcaaatctacgctaaactcaaactcgaatcgaataaaaccaaaatccaccttgtttggaatag |
42769017 |
T |
|
| Q |
401 |
aggtctttatgttcaaggctactcaccaaccattcatccaacaacatcaattgatctatcttctattgccacttttgatgttttgtcaggttcatcatcc |
500 |
Q |
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| T |
42769016 |
aggtctttatgttcaaggctactcaccaaccattcatccaacaacatcaattgatctatcttctattgccacttttgatgttttgtcaggttcatcatcc |
42768917 |
T |
|
| Q |
501 |
tcatcatctcaacacactgacctcacaatgttaagagtgattcatg |
546 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42768916 |
tcatcatctcaacacactgacctcacaatgttaagagtgattcatg |
42768871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 2452115 - 2452607
Alignment:
| Q |
1 |
tgaatcttcctacacaacaagcctcaatagcatggactttacaccctcatagctccaccttagaactaattttctttggcactttcgtttcaccttctgg |
100 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||||| ||||||||| |||||||||||||||| | |||||||| || ||| ||||||||||||| |
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| T |
2452115 |
tgaatcttcccacccaacaagcctctatagcatggactttctaccctcataactccaccttagaactagtcttctttggaaccttcatttcaccttctgg |
2452214 |
T |
|
| Q |
101 |
ttgggtcggatttggtatcaaccctacttcaccacaaatgacaggaactaatgctttgatatcatttccagacccaaatacaggacaaatagttcttcta |
200 |
Q |
| |
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||||| |||| || |||||||| |||||| | | |||||||||||| |||||| ||| | ||| | ||||||| | |||| |||||||| || || |
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| T |
2452215 |
atgggttggatggggaatcaacccaacttcatcggagatgacaggaactcgtgctttaatagccttttctgacccaacttcaggccaaatagtcctactt |
2452314 |
T |
|
| Q |
201 |
cctttcatccttgacactactgtaaaactccaaaaatcaccacttctttctcaaccctttgataatatcaacctcctctcttcctctgcagctatgtatg |
300 |
Q |
| |
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|||| ||| || ||| | | ||| || ||||||||||| || || || |||| || |||| | | ||||| |||||||| | ||||| || |||| |
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| T |
2452315 |
ccttacattctagacccgaatgtgaagctccaaaaatctccgctgctctctcggccacttgacattc---acctcatctcttccacggcagccatatatg |
2452411 |
T |
|
| Q |
301 |
gtggcaaaatggcaaccattcataacggtgcgcctattcaaatctacgctaaactcaaactcgaatcgaataaaaccaaaatccaccttgtttggaatag |
400 |
Q |
| |
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||||||||| ||| ||||||||||| ||||| || || |||||||| || ||| ||||||| ||||| || ||||||||||||||||||||||||||| | |
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| T |
2452412 |
gtggcaaaagggccaccattcataatggtgcccccatccaaatctatgccaaattcaaactagaatcaaacaaaaccaaaatccaccttgtttggaatcg |
2452511 |
T |
|
| Q |
401 |
aggtctttatgttcaaggctactcaccaaccattcatccaacaacatcaattgatctatcttctattgccacttttgatgttttgtcaggttcatc |
496 |
Q |
| |
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||| |||||||||||||||||||| || || ||||||||||| || || | |||||| ||||| |||||||| || || ||||||||||||||||| |
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| T |
2452512 |
aggactttatgttcaaggctactcgcctactattcatccaaccacctccactgatctctcttccattgccaccttggacgttttgtcaggttcatc |
2452607 |
T |
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