View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_1D_high_3 (Length: 566)
Name: NF1623_1D_high_3
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_1D_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 24 - 342
Target Start/End: Complemental strand, 47000072 - 46999750
Alignment:
| Q |
24 |
agttactttcaagacactgaacatgtttgtctatttcagatattttaagtgcatttgcagccaagaagatccaaataaaaccaccacatgcatgaagcac |
123 |
Q |
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| T |
47000072 |
agttactttcaagacactgtacatgtttgtctatttcagatattttaagtgcatttgcagccaaaaagatccaaataaaaccaccacatgcatgaagcac |
46999973 |
T |
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| Q |
124 |
tacaaactgtgttgattttgaaccacccatattaataatttgaatatgtctctctcaaattatttttctcaaattgactaacacaacacacatcaaatga |
223 |
Q |
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| T |
46999972 |
tacaaactgtgttgattttgaaccacccatattaataatttgaatatgtctctctcaaattatttttctaaaattgactaacacaacacacatcaaatga |
46999873 |
T |
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| Q |
224 |
cctcaaaaagttcaattattgttggaagaaatgtcaaacataatttattcaaataatcaaaattgtctatcnnnnnnnaatgttgtt----atgcgatca |
319 |
Q |
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| T |
46999872 |
cctcaaaaagttcaattattgttggaagaaatgtcaaacataatttattcaaataatcaaaattgtctatctttttttaatgttgttattgatgcgatca |
46999773 |
T |
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| Q |
320 |
tctttgtcaacgactaatctcaa |
342 |
Q |
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| T |
46999772 |
tctttgtcaacgactaatctcaa |
46999750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 384 - 506
Target Start/End: Complemental strand, 46999675 - 46999553
Alignment:
| Q |
384 |
tttacaagagacaaaccctagagggaacttgaattgtaaaagggaaattaacagaagggaacaaagcctatatgttcaatttttgtcttctctctaatat |
483 |
Q |
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| T |
46999675 |
tttacaagagacaaaccctagagggaacttgaattgtaaaagggaaattaacaaaagggaacaaagcctatatgttcaatttttctcttctctctaatat |
46999576 |
T |
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| Q |
484 |
aacaatacttttcaaaatttggt |
506 |
Q |
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| T |
46999575 |
aacaatacttttcaaaatttggt |
46999553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 530 - 566
Target Start/End: Complemental strand, 46999528 - 46999492
Alignment:
| Q |
530 |
cagtaggaaactctcaaaatatctcttgctcacatat |
566 |
Q |
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| T |
46999528 |
cagtaggaaactctcaaaatatctcttgctcacatat |
46999492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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