View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_1D_high_7 (Length: 356)
Name: NF1623_1D_high_7
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_1D_high_7 |
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| [»] scaffold0048 (1 HSPs) |
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Alignment Details
Target: scaffold0048 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 24 - 356
Target Start/End: Original strand, 74494 - 74827
Alignment:
| Q |
24 |
tttgttgtatggaatatatgtaggattctctcatgacgagataaaggagtaatatcaaggtgtttgatcatgatagcgaagcagagaattattataatct |
123 |
Q |
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| T |
74494 |
tttgttgtatggaatatatgtaggattctctcatgacgagataaaggagtaatatcaaggtgtttgatcaagatagcgaagtggagaattattgtaatct |
74593 |
T |
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| Q |
124 |
atgttatattgttctcaaaagttgtttagactattgtttatgtttagattgggttatatgctttggtgtagggatatgtaggtcgagtctaataatatgt |
223 |
Q |
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| T |
74594 |
atgttattttgttctcaaaagttgtttagactattgtttatgtttagattgggttatatgctttggtgttgggacatgaaggtcgagtctaataatatgt |
74693 |
T |
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| Q |
224 |
tcttgaaccaatttattggatattgat-nnnnnnnntatgtatttcattttattattaagatatttgtaggtctaaaagaagccaacatatactacattg |
322 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
74694 |
tcttgaaccaatttattggatattgataaaaaaaaatatatatttcattttattattatgatatttgtaggtctaaaagaagccaacatatattactttg |
74793 |
T |
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| Q |
323 |
agttatgaaattaattcgatttatatagtgatga |
356 |
Q |
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|||| ||||||||||| ||||||||| ||||||| |
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| T |
74794 |
agttgtgaaattaatttgatttatattgtgatga |
74827 |
T |
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