View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_1D_low_12 (Length: 348)
Name: NF1623_1D_low_12
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_1D_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 42769626 - 42769952
Alignment:
| Q |
1 |
tgtgtcataattgattttgagggaagttagtttgtgcttaactttgaaggaaagccattaatagtctatctatgcgtttggtggagatttatttnnnnnn |
100 |
Q |
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| T |
42769626 |
tgtgtcataattgattttgagggaagttagtttgtgcttaactttgaaggaaagccattaatagtctatctatgcgtttggtggagatttatttaaaaaa |
42769725 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnngagtggactctataataagaattgatgtttttggcttattatgattggttagaatttataatctaacaatataagagtacaagac |
200 |
Q |
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| T |
42769726 |
gaaaaaagaaaaaaagagtggactctataataagaattgatgtttttggcttattatgattggttagaatttataatctaacaatataagagtacaagac |
42769825 |
T |
|
| Q |
201 |
attatggtctcatataagatacacttgtgtccagtggggctattcctttttgtggtagctatgatttttataagatattgcagattatgtctgcatattg |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769826 |
attatggtctcatataagatacacttgtgtctagtggggctattcctttttgtggtagctatgatttttataagatattgcagattatgtctgcatattg |
42769925 |
T |
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| Q |
301 |
tgcttgcctttgaagctatgttataat |
327 |
Q |
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||||||||||||||||||||||||||| |
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| T |
42769926 |
tgcttgcctttgaagctatgttataat |
42769952 |
T |
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