View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_1D_low_13 (Length: 334)
Name: NF1623_1D_low_13
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_1D_low_13 |
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| [»] scaffold0009 (3 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 34100 - 34427
Alignment:
| Q |
4 |
atttttacaaatcatattttgcctctgatcgacagtggtggggttcagttgcaactatcaattcgaatgggaaataccgatatcatattcctgaatgtgt |
103 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| || ||||||||||||| ||||||||||||||||||| |
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| T |
34100 |
atttttacaaatcatattttgtctctgattgacagtggtggggttcagttgcaagtatcaatgagactgggaaataccgaaatcatattcctgaatgtgt |
34199 |
T |
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| Q |
104 |
ttcatctcatcttacaacgtgtaatattaaaaaatttcaaaccgtggaagctgattttcaatttgcagcgtatatattgatgaatgcgagacttttaaag |
203 |
Q |
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| T |
34200 |
ttcatctcatcttacaacgtgtaatattaaaaattttcaaaccgtggaagctgattttcaatttgcagcgtatatattgatgaatgcgagacttttaaag |
34299 |
T |
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| Q |
204 |
gatttgacgattagctttgctagatgcacagatataatgcagaggttgaaatttatcgatgatttatctcttgtcaaagaatctctcgtgtatgtaagat |
303 |
Q |
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| T |
34300 |
gatttgacgattagctttgctagatgcacagatataatgcagaggtcgaaatgtattgaagatttatctcttgtcaatgaatctctcattcatgtaagat |
34399 |
T |
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| Q |
304 |
ttcattgagatcctaaacgagtacctgg |
331 |
Q |
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| T |
34400 |
ttcattgagatcctaaacgagtacctgg |
34427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 21850 - 22138
Alignment:
| Q |
1 |
actatttttacaaatcatattttgcctctgatcgacagtggtggggttcagttgcaactatcaattcgaatgggaaataccgatatcatattcctgaatg |
100 |
Q |
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| T |
21850 |
actattttgacaaatcatattttgtctctgattgacagtggcggggttcagttgcaactatcaattcgaatgggaaataccaagatcatattcctgaatg |
21949 |
T |
|
| Q |
101 |
tgtttcatctcatcttacaacgtgtaatattaaaaaatttcaaaccgtggaagctgattttcaatttgcagcgtatatattgatgaatgcgagactttta |
200 |
Q |
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| T |
21950 |
tgtttcgtctcatcttacaacatgcaatattacaaattatcaaactgtggaagctgattttcaattttcatcgtatatattgaagaacgcgaaactttta |
22049 |
T |
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| Q |
201 |
aaggatttgacgattagctttgctagatgcacagatataatgcagaggttgaaatttatcgatgatttat-ctcttgtcaaagaatctc |
288 |
Q |
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| T |
22050 |
aaggatatgtcgatcaactttgctagatgctcagatataatgcagaggttgaagtgtatctaagatttatcctcttgtgaaagaatctc |
22138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 40727 - 41052
Alignment:
| Q |
1 |
actatttttacaaatcatattttgcctctgatcgacagtggtggggttcagttgcaactatcaattcgaatgggaaataccgatatcatattcctgaatg |
100 |
Q |
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| T |
40727 |
actatttttacaaatcatattttgtctctgattgacagtggtggggttcaattacaactatcatggagaatgggaaataccaagatcatgttcctgaatg |
40826 |
T |
|
| Q |
101 |
tgtttcatctcatcttacaacgtgtaatattaaaaaatttcaaaccgtggaagctgattttcaatttgcagcgtatatattgatgaatgcgagactttta |
200 |
Q |
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| T |
40827 |
tgtttcgtctcatcttacaacaattaatattacaaattatcaaactgtggaagctgattttaaatttgcatcgtatatattgaagaacgcaagactttta |
40926 |
T |
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| Q |
201 |
aaggatttgacgattagctttgctagatgcacagatataatgcagaggttgaaatttatcgatgatttatctcttgtcaaagaatctctcgtgtatgtaa |
300 |
Q |
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| T |
40927 |
aaggatatgacgatctgctttgctagatgctcagatataatgcagtggacgaaatgtattgaagatttatctc--gtcaaagaatctccggtgcatgtaa |
41024 |
T |
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| Q |
301 |
gatttcattgagatcctaaacgagtacc |
328 |
Q |
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| T |
41025 |
gatttcattgagatactaaaagagtacc |
41052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 19969445 - 19969314
Alignment:
| Q |
73 |
ggaaataccgatatcatattcctgaatgtgtttcatctcatcttacaacgtgtaatattaaaaaatttcaaaccgtggaagctgattttcaatttgcagc |
172 |
Q |
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||||||||| ||||||| |||| |||||||||| |||||||||||||| |||||||||| | | | |||| | |||||||||||||||| ||||||| | |
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| T |
19969445 |
ggaaatacccatatcatgttcccgaatgtgttttgtctcatcttacaacatgtaatattacacactatcaagctgtggaagctgattttcgatttgcaac |
19969346 |
T |
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| Q |
173 |
gtatatattgatgaatgcgagacttttaaagg |
204 |
Q |
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| T |
19969345 |
gtatattttgcagaacgctagacatttaaagg |
19969314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 190
Target Start/End: Complemental strand, 1347815 - 1347702
Alignment:
| Q |
77 |
ataccgatatcatattcctgaatgtgtttcatctcatcttacaacgtgtaatattaaaaaatttcaaaccgtggaagctgattttcaatttgcagcgtat |
176 |
Q |
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||||| ||||||| ||||| |||||||||| |||||||||||||| |||||||| | | | | |||| | |||||||||||||| | ||||||| | ||| |
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| T |
1347815 |
atacccatatcatgttcctcaatgtgtttcctctcatcttacaacatgtaatatcatacactatcaagctgtggaagctgatttccgatttgcaacctat |
1347716 |
T |
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| Q |
177 |
atattgatgaatgc |
190 |
Q |
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| T |
1347715 |
atattgaagaatgc |
1347702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 9619116 - 9619170
Alignment:
| Q |
73 |
ggaaataccgatatcatattcctgaatgtgtttcatctcatcttacaacgtgtaa |
127 |
Q |
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| T |
9619116 |
ggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaa |
9619170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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