View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1623_1D_low_14 (Length: 333)

Name: NF1623_1D_low_14
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1623_1D_low_14
NF1623_1D_low_14
[»] chr2 (4 HSPs)
chr2 (51-273)||(15255530-15255752)
chr2 (73-193)||(19131943-19132063)
chr2 (120-192)||(15606159-15606231)
chr2 (121-190)||(19043719-19043788)
[»] chr3 (1 HSPs)
chr3 (51-273)||(17655823-17656046)
[»] chr7 (3 HSPs)
chr7 (51-248)||(41058058-41058253)
chr7 (121-190)||(14244571-14244640)
chr7 (121-190)||(8856938-8857007)
[»] chr4 (2 HSPs)
chr4 (120-192)||(7803352-7803424)
chr4 (112-193)||(53650723-53650805)
[»] scaffold0009 (4 HSPs)
scaffold0009 (23-55)||(33812-33844)
scaffold0009 (284-316)||(33828-33860)
scaffold0009 (284-316)||(40446-40478)
scaffold0009 (20-55)||(40427-40462)
[»] chr8 (1 HSPs)
chr8 (121-190)||(33862923-33862992)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 6e-99; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 51 - 273
Target Start/End: Original strand, 15255530 - 15255752
Alignment:
Q  51 attttggtctttcacttgatactctaactatttggctagagatccctatgtgcattagaagtttttattttcaaaacaggcttggtttgccttgttttag 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15255530 attttggtctttcacttgatactctaactatttggctagagatccctatgtgcattagaagtttttactttcaaaacaggcttggtttgccttgttttag 15255629  T
Q  151 gtttgtaaacttctaacgaggtttggtttggcccccctcttttacattgtacttttcctgtttctcnnnnnnnnggtaatatattttggatagtcttagc 250  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||||||||    
T  15255630 gtttgtaaacttctaaagaggtttggtttggcccccctcttttacattgttcttttcctgtttctcttttttttggtaatatattttggatagtcttagc 15255729  T
Q  251 tctttgctaagctatctttactt 273  Q
    ||||||||||| |||||||||||    
T  15255730 tctttgctaagttatctttactt 15255752  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 73 - 193
Target Start/End: Original strand, 19131943 - 19132063
Alignment:
Q  73 tctaactatttggctagagatccctatgtgcattagaagtttttattttcaaaacaggcttggtttgccttgttttaggtttgtaaacttctaacgaggt 172  Q
    ||||||| ||||||||||||| ||||  || ||||||||||||||| ||||||||||||| || || ||| ||||||||||||||||||  | | |||||    
T  19131943 tctaactgtttggctagagatacctaattgtattagaagtttttatgttcaaaacaggctagggttacctagttttaggtttgtaaactattgaagaggt 19132042  T
Q  173 ttggtttggcccccctctttt 193  Q
    ||||||||| ||| |||||||    
T  19132043 ttggtttggtccctctctttt 19132063  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 15606231 - 15606159
Alignment:
Q  120 ttcaaaacaggcttggtttgccttgttttaggtttgtaaacttctaacgaggtttggtttggcccccctcttt 192  Q
    ||||||| ||||| || |||||| ||||||||||||||||||| | | |||||||||||||| ||||||||||    
T  15606231 ttcaaaataggctagggttgcctggttttaggtttgtaaacttttgaagaggtttggtttggtccccctcttt 15606159  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 19043788 - 19043719
Alignment:
Q  121 tcaaaacaggcttggtttgccttgttttaggtttgtaaacttctaacgaggtttggtttggcccccctct 190  Q
    ||||||| |||| ||  ||||||||||||||||||||||||  | | || ||||| ||||||||||||||    
T  19043788 tcaaaacgggctagggctgccttgttttaggtttgtaaactcttgaagaagtttgatttggcccccctct 19043719  T

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Target: chr3 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 51 - 273
Target Start/End: Original strand, 17655823 - 17656046
Alignment:
Q  51 attttggtctttcacttgatactctaactatttggctagagatccctatgtgcattagaagtttttattttcaaaacaggcttggtttgccttgttttag 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17655823 attttggtctttcacttgatactctaactatttggctagagatccctatgtgcattagaagtttttattttcaaagcaggcttggtttgccttgttttag 17655922  T
Q  151 gtttgtaaacttctaacgaggtttggtttggcccccctcttttacattgtacttttcctgtttctc-nnnnnnnnggtaatatattttggatagtcttag 249  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||    
T  17655923 gtttgtaaacttctaaaaaggtttggtttggcccccctcttttacattgtacttttcctgtttctcttttttttttgtaatatattttggatagtcttag 17656022  T
Q  250 ctctttgctaagctatctttactt 273  Q
    ||||||||||||||||||||||||    
T  17656023 ctctttgctaagctatctttactt 17656046  T

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Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 51 - 248
Target Start/End: Original strand, 41058058 - 41058253
Alignment:
Q  51 attttggtctttcacttgatactctaactatttggctagagatccctatgtgcattagaagtttttattttcaaaacaggcttggtttgccttgttttag 150  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41058058 attttggtctttcacttgatact--aactatttggctagagatccctatgtgcattagaagtttttactttcaaaacaggcttggtttgccttgttttag 41058155  T
Q  151 gtttgtaaacttctaacgaggtttggtttggcccccctcttttacattgtacttttcctgtttctcnnnnnnnnggtaatatattttggatagtctta 248  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||         ||||||||||||||||||||||||    
T  41058156 gtttgtaaacttctaaagaggtttggtttggcccccctcttttacattgttcttttcctgtttctttgttttttggtaatatattttggatagtctta 41058253  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 14244640 - 14244571
Alignment:
Q  121 tcaaaacaggcttggtttgccttgttttaggtttgtaaacttctaacgaggtttggtttggcccccctct 190  Q
    |||||||||||| ||  ||||||||||||||||||||||||  | | |||||||||||||||||||||||    
T  14244640 tcaaaacaggctcgggctgccttgttttaggtttgtaaactcttgaagaggtttggtttggcccccctct 14244571  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 8856938 - 8857007
Alignment:
Q  121 tcaaaacaggcttggtttgccttgttttaggtttgtaaacttctaacgaggtttggtttggcccccctct 190  Q
    ||||||||| || ||  |||||||||||||||||||| | |  | | |||||||||||||||||||||||    
T  8856938 tcaaaacagactagggctgccttgttttaggtttgtatagtcttgaagaggtttggtttggcccccctct 8857007  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 7803424 - 7803352
Alignment:
Q  120 ttcaaaacaggcttggtttgccttgttttaggtttgtaaacttctaacgaggtttggtttggcccccctcttt 192  Q
    ||||||||||||| || |||||| ||||||||||||||||||| | | |||||||||||||| ||||||||||    
T  7803424 ttcaaaacaggctagggttgcctggttttaggtttgtaaacttttgaagaggtttggtttggtccccctcttt 7803352  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 53650723 - 53650805
Alignment:
Q  112 tttttattttcaaaacaggcttggtttgccttgttttaggtttgtaaacttctaa-cgaggtttggtttggcccccctctttt 193  Q
    |||||||| ||||||||||||  ||||||| |||||||||||| | |||||||||  |||||||||| || ||||||||||||    
T  53650723 tttttattatcaaaacaggctatgtttgccatgttttaggtttattaacttctaatagaggtttggtctgacccccctctttt 53650805  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 33812 - 33844
Alignment:
Q  23 gtatcatcactattacgtatgttgtttgatttt 55  Q
    |||||||||||||||||||||||||||||||||    
T  33812 gtatcatcactattacgtatgttgtttgatttt 33844  T

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Target: scaffold0009; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 33828 - 33860
Alignment:
Q  284 gtatgttgtttgatttttgtttgtttgtgatgt 316  Q
    |||||||||||||||||||||||||||||||||    
T  33828 gtatgttgtttgatttttgtttgtttgtgatgt 33860  T

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Target: scaffold0009; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 40446 - 40478
Alignment:
Q  284 gtatgttgtttgatttttgtttgtttgtgatgt 316  Q
    |||||||||||||||||||||||||||||||||    
T  40446 gtatgttgtttgatttttgtttgtttgtgatgt 40478  T

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Target: scaffold0009; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 40427 - 40462
Alignment:
Q  20 tttgtatcatcactattacgtatgttgtttgatttt 55  Q
    |||||||||||| |||||||||||||||||||||||    
T  40427 tttgtatcatcaatattacgtatgttgtttgatttt 40462  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 33862923 - 33862992
Alignment:
Q  121 tcaaaacaggcttggtttgccttgttttaggtttgtaaacttctaacgaggtttggtttggcccccctct 190  Q
    ||||||||| || ||  |||||||||||||||||||| | |  | | |||||||||||||||||||||||    
T  33862923 tcaaaacagactagggctgccttgttttaggtttgtatagtcttgaagaggtttggtttggcccccctct 33862992  T

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