View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1623_1D_low_15 (Length: 315)

Name: NF1623_1D_low_15
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1623_1D_low_15
NF1623_1D_low_15
[»] scaffold0048 (1 HSPs)
scaffold0048 (1-301)||(76579-76879)
[»] scaffold0103 (3 HSPs)
scaffold0103 (114-279)||(17452-17622)
scaffold0103 (168-233)||(17639-17704)
scaffold0103 (154-195)||(17661-17702)
[»] chr2 (3 HSPs)
chr2 (114-279)||(16932654-16932824)
chr2 (168-233)||(16932572-16932637)
chr2 (154-195)||(16932574-16932615)
[»] chr5 (2 HSPs)
chr5 (88-192)||(25582728-25582831)
chr5 (227-280)||(25582860-25582913)
[»] chr7 (2 HSPs)
chr7 (88-194)||(9694430-9694535)
chr7 (203-280)||(9694528-9694605)
[»] chr4 (2 HSPs)
chr4 (88-194)||(13560807-13560912)
chr4 (203-280)||(13560905-13560982)
[»] chr1 (1 HSPs)
chr1 (227-280)||(20947112-20947165)


Alignment Details
Target: scaffold0048 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 76579 - 76879
Alignment:
Q  1 atgttgtattagtgaggggaataaaagtgataggaagaacgataattggcgaggtaaaaaccttaaactagaaacgaggaatgaagcgttgccgttagaa 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  76579 atgttgtattagtgaggggaataaaagtcataggaagaacgataattggcgaggtaaaaaccttaaactagaaacgaggaatggatcgttgccgttagaa 76678  T
Q  101 ttaagtacgtaggaaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacgatgttgagtggcga 200  Q
    | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  76679 tgaagtacgtagtaaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacgatgttgagtggtga 76778  T
Q  201 cgatgtttagtaatgaagaatccatgatgttgattaatgatcacgtaaataatgagtctgacaaatgaaattatgttgtaattgggagctgttgttgatg 300  Q
    | ||||| |||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  76779 caatgttgagtaatgaagaagcgatgatgttgattaatgatcacgtaaatgatgagtttgacaaatgaaattatgttgtaattgtgagctgttgatgatg 76878  T
Q  301 t 301  Q
    |    
T  76879 t 76879  T

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Target: scaffold0103 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 279
Target Start/End: Complemental strand, 17622 - 17452
Alignment:
Q  114 aaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacgatgttgagtggcgacgatgtttagtaa 213  Q
    ||||||||||| | |||||||||| ||||||||||| |||| ||||||  |||||||||| |||  |||||| |||||||||   ||||||||| |||||    
T  17622 aaataaggggatccagtgttgagtttaggttttaattacaa-tgttgataaatgacaatgctgagaaatgacaatgttgagtaatgacgatgttgagtaa 17524  T
Q  214 tgaagaatccatgatgttga------ttaatgatcacgtaaataatgagtctgacaaatgaaattatgttgt 279  Q
    ||||||| ||||||||||||      || ||||| |||||||| |||||||| ||| |||||||||||||||    
T  17523 tgaagaaaccatgatgttgaataatgttgatgatgacgtaaatgatgagtctaacagatgaaattatgttgt 17452  T

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Target: scaffold0103; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 17704 - 17639
Alignment:
Q  168 acaatgttgaataatgacgatgttgagtggcgacgatgtttagtaatgaagaatccatgatgttga 233  Q
    ||||||||||  |||||| |||||||||   ||||||||  |||||||||||| ||||||||||||    
T  17704 acaatgttgagaaatgacaatgttgagtaatgacgatgtggagtaatgaagaaaccatgatgttga 17639  T

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Target: scaffold0103; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 17702 - 17661
Alignment:
Q  154 aatgttgagtaatgacaatgttgaataatgacgatgttgagt 195  Q
    ||||||||| |||||||||||||| |||||||||||| ||||    
T  17702 aatgttgagaaatgacaatgttgagtaatgacgatgtggagt 17661  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 279
Target Start/End: Original strand, 16932654 - 16932824
Alignment:
Q  114 aaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacgatgttgagtggcgacgatgtttagtaa 213  Q
    ||||||||||| | |||||||||| ||||||||||| |||| ||||||  |||||||||| |||  |||||| |||||||||   ||||||||| |||||    
T  16932654 aaataaggggatccagtgttgagtttaggttttaattacaa-tgttgataaatgacaatgctgagaaatgacaatgttgagtaatgacgatgttgagtaa 16932752  T
Q  214 tgaagaatccatgatgttga------ttaatgatcacgtaaataatgagtctgacaaatgaaattatgttgt 279  Q
    ||||||| ||||||||||||      || ||||| |||||||| |||||||| ||| |||||||||||||||    
T  16932753 tgaagaaaccatgatgttgaataatgttgatgatgacgtaaatgatgagtctaacagatgaaattatgttgt 16932824  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 16932572 - 16932637
Alignment:
Q  168 acaatgttgaataatgacgatgttgagtggcgacgatgtttagtaatgaagaatccatgatgttga 233  Q
    ||||||||||  |||||| |||||||||   ||||||||  |||||||||||| ||||||||||||    
T  16932572 acaatgttgagaaatgacaatgttgagtaatgacgatgtggagtaatgaagaaaccatgatgttga 16932637  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 16932574 - 16932615
Alignment:
Q  154 aatgttgagtaatgacaatgttgaataatgacgatgttgagt 195  Q
    ||||||||| |||||||||||||| |||||||||||| ||||    
T  16932574 aatgttgagaaatgacaatgttgagtaatgacgatgtggagt 16932615  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 25582728 - 25582831
Alignment:
Q  88 gttgccgttagaattaagtacgtaggaaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacga 187  Q
    ||||||||||| || |||| ||||| ||||||||||||| | | ||||||| | ||||||||||| ||||||||| |||||||||||||| |||| || |    
T  25582728 gttgccgttagtatgaagtgcgtagtaaataaggggagccaatattgagtgcaagttttaatgac-aatgttgagaaatgacaatgttgagtaataacaa 25582826  T
Q  188 tgttg 192  Q
    |||||    
T  25582827 tgttg 25582831  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 25582860 - 25582913
Alignment:
Q  227 atgttgattaatgatcacgtaaataatgagtctgacaaatgaaattatgttgta 280  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||| |||||||    
T  25582860 atgttgattaatgatgacgtaaatgatgagtctgacatatgaaattctgttgta 25582913  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 9694430 - 9694535
Alignment:
Q  88 gttgccgttagaattaagtacgtaggaaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacga 187  Q
    |||||||||||||| |||| ||||| ||| ||||||||| | ||||||||||  |||||||| | ||||||| || ||||| |||||||| |||| || |    
T  9694430 gttgccgttagaatgaagtgcgtagtaaacaaggggagccaatgttgagtgtgagttttaat-aaaaatgttaagaaatgaaaatgttgagtaataacaa 9694528  T
Q  188 tgttgag 194  Q
    |||||||    
T  9694529 tgttgag 9694535  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 9694528 - 9694605
Alignment:
Q  203 atgtttagtaatgaagaatccatgatgttgattaatgatcacgtaaataatgagtctgacaaatgaaattatgttgta 280  Q
    ||||| || |||||||||  ||| ||||  ||||||||| |||||||| |||||||||||| |||||||| |||||||    
T  9694528 atgttgagcaatgaagaaatcataatgtacattaatgatgacgtaaatgatgagtctgacatatgaaattctgttgta 9694605  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 13560807 - 13560912
Alignment:
Q  88 gttgccgttagaattaagtacgtaggaaataaggggagctagtgttgagtgtaggttttaatgacaaatgttgagtaatgacaatgttgaataatgacga 187  Q
    |||||||||||||| |||| ||||| ||| ||||||||| | ||||||||||  |||||||| | ||||||| || ||||| |||||||| |||| || |    
T  13560807 gttgccgttagaatgaagtgcgtagtaaacaaggggagccaatgttgagtgtgagttttaat-aaaaatgttaagaaatgaaaatgttgagtaataacaa 13560905  T
Q  188 tgttgag 194  Q
    |||||||    
T  13560906 tgttgag 13560912  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 13560905 - 13560982
Alignment:
Q  203 atgtttagtaatgaagaatccatgatgttgattaatgatcacgtaaataatgagtctgacaaatgaaattatgttgta 280  Q
    ||||| || |||||||||  ||| ||||  ||||||||| |||||||| |||||||||||| |||||||| |||||||    
T  13560905 atgttgagcaatgaagaaatcataatgtacattaatgatgacgtaaatgatgagtctgacatatgaaattctgttgta 13560982  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 20947165 - 20947112
Alignment:
Q  227 atgttgattaatgatcacgtaaataatgagtctgacaaatgaaattatgttgta 280  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||| |||||||    
T  20947165 atgttgattaatgatgacgtaaatgatgagtctgacatatgaaattctgttgta 20947112  T

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