View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1623_1D_low_20 (Length: 269)
Name: NF1623_1D_low_20
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_1D_low_20 |
 | |
|
| [»] scaffold0009 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0009 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 33879 - 34128
Alignment:
| Q |
1 |
tcccactgaagaaaacacttcatattacaaaaacttgccgctatttgaaaacttaattgaacttcggttatcgtggacttcacgtgtcactcatgactgg |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33879 |
tcccaatgaagaaaacacttcatattacaaaaacttgcctctatttgaaaacttaattgaacttcggttatcgtggacttcacgtgttactcatgactgg |
33978 |
T |
|
| Q |
101 |
agtgaggtaatgcaaatgctccagcattgtccgaaacttcaaactctttcgattaaaaaggtttgtttttcttgcctatggatagttataatttgatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
33979 |
agtgaggtaatgcaaatgctccagcattgtccgaaacttcaaactctttcgattaaaaaggtttgtttatcttgcttatggatagttataatttgatttt |
34078 |
T |
|
| Q |
201 |
tctttgttcttccacttaactatttttacaaatcatattttgtctctgat |
250 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34079 |
tctttgttcttctacttaaccatttttacaaatcatattttgtctctgat |
34128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 40503 - 40758
Alignment:
| Q |
7 |
tgaagaaaacacttcatattacaaaaacttgccgctatttgaaaacttaattgaacttcggttatcgtggacttcacgtgtcactcatgactggagtgag |
106 |
Q |
| |
|
||||||||| |||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40503 |
tgaagaaaatacttcatattacaaaagcttacctatatttgaaaacttaattgaacttcggttatcgtggacttcacgtgtcactcatgactggagtgag |
40602 |
T |
|
| Q |
107 |
gtaatgcaaatgctccagcattgtccgaaacttcaaactctttcgattaaaaaggtttgtttttcttgcctatggat---agttataatttgatttttct |
203 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | || |||||| || ||||||||||||||| | |
|
|
| T |
40603 |
gtaatgaaaatgctccagaattgtccgaaacttcaaactctttcgattaaaaaggtttgtttatcattcccatggatagcagctataatttgatttttgt |
40702 |
T |
|
| Q |
204 |
ttgttcttc---------cacttaactatttttacaaatcatattttgtctctgat |
250 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40703 |
ttgttcttctcttttaattagttaactatttttacaaatcatattttgtctctgat |
40758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 21825 - 21881
Alignment:
| Q |
194 |
tgatttttctttgttcttccacttaactatttttacaaatcatattttgtctctgat |
250 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21825 |
tgatttttctttgttcttctacttaactattttgacaaatcatattttgtctctgat |
21881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 16258514 - 16258450
Alignment:
| Q |
103 |
tgaggtaatgcaaatgctccagcattgtccgaaacttcaaactctttcgattaaaaaggtttgtt |
167 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||| |||||| ||| ||||||||||| |
|
|
| T |
16258514 |
tgaggtagtgcaaatgctccataattgtccgaaacttcaaagtctttcaatttcaaaggtttgtt |
16258450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 19806889 - 19806967
Alignment:
| Q |
90 |
ctcatgactggagtgaggtaatgcaaatgctccagcattgtccgaaacttcaaactctttcgattaaaaaggtttgttt |
168 |
Q |
| |
|
||||||| ||| ||||||| || |||||||||| ||||||| ||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
19806889 |
ctcatgattgggatgaggtagtgaaaatgctccaaaattgtcccaaactccaaactcttgcaattaaaaaggtttgttt |
19806967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 32226556 - 32226620
Alignment:
| Q |
103 |
tgaggtaatgcaaatgctccagcattgtccgaaacttcaaactctttcgattaaaaaggtttgtt |
167 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||||||||||||||| | ||| ||||||||||| |
|
|
| T |
32226556 |
tgaggtagtgcaaatgctccattattgtcccaaacttcaaactcttccaatttcaaaggtttgtt |
32226620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 32242094 - 32242030
Alignment:
| Q |
103 |
tgaggtaatgcaaatgctccagcattgtccgaaacttcaaactctttcgattaaaaaggtttgtt |
167 |
Q |
| |
|
||||||| ||||||||||||| ||||||| || |||||||||||||| ||| ||||||||||| |
|
|
| T |
32242094 |
tgaggtactgcaaatgctccattattgtcccaaccttcaaactctttcaattttaaaggtttgtt |
32242030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University