View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_1D_low_21 (Length: 257)
Name: NF1623_1D_low_21
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_1D_low_21 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 698460 - 698222
Alignment:
| Q |
19 |
caaaaactccacaagaaagcacactatccaaagctctaagctcaatgatcaaaagcataggaaaacaaaaaacagatcagtcagataagtttaccaaggt |
118 |
Q |
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| T |
698460 |
caaaaactccacaagaaagcacactatccaaagctctaagctcaatgatcaaaagcataggaaaacaaaaaacagatcagtcagctaagtttaccaaggt |
698361 |
T |
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| Q |
119 |
tccaatctctggtttaggttccaataactcggccataggctcaattttatccataagttttttatatttcttctcttttctctcaaatttatgtagacac |
218 |
Q |
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| T |
698360 |
cccaatctctggtttaggttccaataactcggccataggctcaattttatccataagttttttatatttcttctcttttctctcaaatttatgtagacac |
698261 |
T |
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| Q |
219 |
ttctgatgataatttgttgctttatcaattttttcttca |
257 |
Q |
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| T |
698260 |
ttctgatgataatttgttgctttatcaattttttcttca |
698222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 665644 - 665591
Alignment:
| Q |
34 |
aaagcacactatccaaagctctaagctcaatgatcaaaagcataggaaaacaaaa |
88 |
Q |
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| T |
665644 |
aaagcacactatccaaagctctaagctcaatgaacaaaagcata-gaaaacaaaa |
665591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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