View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_1D_low_28 (Length: 231)
Name: NF1623_1D_low_28
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_1D_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 35071947 - 35072156
Alignment:
| Q |
1 |
tacagttagctggaagagtaaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071947 |
tacagttagctggaagagtaaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctc |
35072046 |
T |
|
| Q |
101 |
tcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072047 |
tcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtt |
35072146 |
T |
|
| Q |
201 |
tccttccaat |
210 |
Q |
| |
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|||||||||| |
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| T |
35072147 |
tccttccaat |
35072156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 35072805 - 35072996
Alignment:
| Q |
19 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
118 |
Q |
| |
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|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || ||| ||||||| || |||||||||| || |
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| T |
35072805 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttcctctcaccgcttatctgaagaac |
35072904 |
T |
|
| Q |
119 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttccaat |
210 |
Q |
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| T |
35072905 |
cctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttccaat |
35072996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 35107055 - 35106864
Alignment:
| Q |
19 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
118 |
Q |
| |
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|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || | | ||||||| || |||||||||| || |
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| T |
35107055 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaaagttcctctcaccgcttatctgaagaac |
35106956 |
T |
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| Q |
119 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttccaat |
210 |
Q |
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| T |
35106955 |
cctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttccaat |
35106864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 24040861 - 24041052
Alignment:
| Q |
19 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
118 |
Q |
| |
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|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || | | ||||||| || |||||||||| || |
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| T |
24040861 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttcctctcaccgcttatctgaagaac |
24040960 |
T |
|
| Q |
119 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttccaat |
210 |
Q |
| |
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|| ||||||||| ||||| |||||||| || || ||||| || || | |||||| ||||| ||||| |||||||| || |||||||||| |
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| T |
24040961 |
cctatcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctccttccaat |
24041052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 210
Target Start/End: Original strand, 24014379 - 24014495
Alignment:
| Q |
94 |
tcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttc |
193 |
Q |
| |
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|||||||||| |||||||||| || || || |||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| ||||| |
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| T |
24014379 |
tcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgcttc |
24014478 |
T |
|
| Q |
194 |
tggagtttccttccaat |
210 |
Q |
| |
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||| || |||||||||| |
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| T |
24014479 |
tggggtctccttccaat |
24014495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 3123163 - 3123082
Alignment:
| Q |
124 |
catcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
205 |
Q |
| |
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||||||||| ||||| ||||| || || || |||| |||||| | |||||||||||| ||||| |||||| |||||||||| |
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| T |
3123163 |
catcttcaatttcaaccttcacctcttccttcttcaaccctggaagatcagctttgaacacatgtgcttctagagtttcctt |
3123082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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