View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1623_1D_low_31 (Length: 226)

Name: NF1623_1D_low_31
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1623_1D_low_31
NF1623_1D_low_31
[»] scaffold0048 (1 HSPs)
scaffold0048 (17-205)||(76943-77131)
[»] chr7 (5 HSPs)
chr7 (17-205)||(11802086-11802273)
chr7 (32-205)||(16381315-16381488)
chr7 (32-197)||(12245355-12245519)
chr7 (142-201)||(9694687-9694746)
chr7 (77-141)||(9694698-9694762)
[»] chr5 (8 HSPs)
chr5 (17-200)||(91510-91692)
chr5 (32-141)||(32946533-32946642)
chr5 (32-123)||(25583002-25583093)
chr5 (48-158)||(39891005-39891116)
chr5 (133-188)||(39891132-39891187)
chr5 (19-75)||(24146124-24146180)
chr5 (142-194)||(32946594-32946646)
chr5 (32-75)||(29482438-29482481)
[»] chr1 (3 HSPs)
chr1 (32-203)||(17614011-17614182)
chr1 (32-141)||(20946910-20947019)
chr1 (142-201)||(20946971-20947030)
[»] chr8 (1 HSPs)
chr8 (44-200)||(22561218-22561378)
[»] chr2 (5 HSPs)
chr2 (32-123)||(19464786-19464877)
chr2 (43-141)||(16932909-16933007)
chr2 (142-201)||(19464757-19464816)
chr2 (142-200)||(16932899-16932957)
chr2 (69-201)||(20178701-20178833)
[»] scaffold0103 (2 HSPs)
scaffold0103 (43-141)||(17269-17367)
scaffold0103 (142-200)||(17319-17377)
[»] scaffold0512 (1 HSPs)
scaffold0512 (133-205)||(7455-7527)
[»] chr6 (1 HSPs)
chr6 (32-115)||(31139142-31139225)
[»] chr4 (5 HSPs)
chr4 (84-188)||(51133980-51134083)
chr4 (142-201)||(13561064-13561123)
chr4 (77-141)||(13561075-13561139)
chr4 (105-188)||(51133650-51133733)
chr4 (142-188)||(51135894-51135940)


Alignment Details
Target: scaffold0048 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 77131 - 76943
Alignment:
Q  17 acatcatatatagccaacatgagccatatgcaaattcacttcattcctagacctatatgaatcccagtaccggtttctaattaacatttgtatgtcagag 116  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  77131 acatcatatacacccaacatgagccatatgcaaattcacttcattcctagacctatatgaatcccactaccggtttctaattaacatttgtatgtcagag 77032  T
Q  117 ttgtgtttatgatcacacatacaacctaatcaacatttgtatgttagatttgtgttactaaacataaatacaacattcgtcattcgtca 205  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  77031 ttgtgtttatgatcacacatacaacctaatcaacatttgtatgctagatttgtgttactaaacataaatgcaacattcgtcattcgtca 76943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 11802273 - 11802086
Alignment:
Q  17 acatcatatatagccaacatgagccatatgcaaattcacttcattcctagacctatatgaatcccagtaccggtttctaattaacatttgtatgtcagag 116  Q
    |||||||||| | | |||||| |||| |||||||| || |||||||||||||||||||| ||||| ||||||||||||||| | ||||||||||||||||    
T  11802273 acatcatatacacctaacatgggccaaatgcaaatacatttcattcctagacctatatgcatcccggtaccggtttctaatca-catttgtatgtcagag 11802175  T
Q  117 ttgtgtttatgatcacacatacaacctaatcaacatttgtatgttagatttgtgttactaaacataaatacaacattcgtcattcgtca 205  Q
    || ||||  | | || ||||| | |||||||||||| ||||||| ||| |||||||||| |||||| ||||| |||||||| |||||||    
T  11802174 ttatgttactaagcatacataaatcctaatcaacatatgtatgtcagagttgtgttactgaacatacatacatcattcgtccttcgtca 11802086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 16381488 - 16381315
Alignment:
Q  32 aacatgagccatatgcaaattcacttcattcctagacctatatgaatcccagtaccggtttctaattaacatttgtatgtcagagttgtgtttatgatca 131  Q
    |||||||| ||||||||||| |||||  ||||||||| |||||| ||| | ||||||||||||||| ||||||||||||||||| || ||||  |||  |    
T  16381488 aacatgagtcatatgcaaatacactttgttcctagacttatatgcatcactgtaccggtttctaatgaacatttgtatgtcagaattatgttactgagga 16381389  T
Q  132 cacatacaacctaatcaacatttgtatgttagatttgtgttactaaacataaatacaacattcgtcattcgtca 205  Q
     |||||||  ||||||||||||||||||| ||| || ||||||| |||||| ||| |||||||||  |||||||    
T  16381388 tacatacattctaatcaacatttgtatgtcagagttatgttacttaacatacatataacattcgtacttcgtca 16381315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 12245355 - 12245519
Alignment:
Q  32 aacatgagccatatgcaaattcacttcattcctagacctatatgaatcccagtaccggtttctaattaacatttgtatgtcagagttgtgtttatgatca 131  Q
    |||||||| ||||||||||| |||||| |||||||||||||||| ||||| |||  ||||||| || ||||| ||||||| |||||| ||||  ||| ||    
T  12245355 aacatgagacatatgcaaatgcacttcgttcctagacctatatgcatcccggtataggtttctgatcaacatctgtatgttagagttatgttactgagca 12245454  T
Q  132 cacatacaacctaatcaacatttgtatgttagatttgtgttactaaacataaatacaacattcgtc 197  Q
     |||||||  |||||||||| |||||||| ||| |||||||| | |||||| ||||| ||||||||    
T  12245455 tacatacattctaatcaaca-ttgtatgtcagagttgtgttattgaacatacatacatcattcgtc 12245519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 9694746 - 9694687
Alignment:
Q  142 ctaatcaacatttgtatgttagatttgtgttactaaacataaatacaacattcgtcattc 201  Q
    ||||||||||||||||||| ||| || ||||||| |||||| ||||||||||||||||||    
T  9694746 ctaatcaacatttgtatgtcagagttctgttactgaacatacatacaacattcgtcattc 9694687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 9694762 - 9694698
Alignment:
Q  77 atcccagtaccggtttctaattaacatttgtatgtcagagttgtgtttatgatcacacatacaac 141  Q
    ||||| ||||||||||||||| |||||||||||||||||||| ||||  ||| || |||||||||    
T  9694762 atcccggtaccggtttctaatcaacatttgtatgtcagagttctgttactgaacatacatacaac 9694698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 91692 - 91510
Alignment:
Q  17 acatcatatatagccaacatgagccatatgcaaattcacttcattcctagacctatatgaatcccagtaccggtttctaattaacatttgtatgtcagag 116  Q
    |||||||||| | | |||||||| ||||||||||| |||||| |||||| ||||||||| |||   ||||  |||| |||| ||||||||||||||||||    
T  91692 acatcatatacacctaacatgagacatatgcaaat-cacttcgttcctaaacctatatgcatcttggtactagtttataatcaacatttgtatgtcagag 91594  T
Q  117 ttgtgtttatgatcacacatacaacctaatcaacatttgtatgttagatttgtgttactaaacataaatacaacattcgtcatt 200  Q
    || ||||  ||| || |||||||||||||||||||||| ||||| |||||| ||||||| |||||| |||||||||||||||||    
T  91593 ttttgttactgagcatacatacaacctaatcaacatttatatgtcagatttatgttactgaacatacatacaacattcgtcatt 91510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 32946533 - 32946642
Alignment:
Q  32 aacatgagccatatgcaaattcacttcattcctagacctatatgaatcccagtaccggtttctaattaacatttgtatgtcagagttgtgtttatgatca 131  Q
    |||||||| ||||||||||| |||||| ||||| |||||||||| |||||  |||||||||||||| |||||||||||||||||| ||||||  ||| ||    
T  32946533 aacatgagacatatgcaaatgcacttcgttcctggacctatatgcatcccgataccggtttctaatcaacatttgtatgtcagagctgtgttactgaaca 32946632  T
Q  132 cacatacaac 141  Q
     |||||||||    
T  32946633 tacatacaac 32946642  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 25583093 - 25583002
Alignment:
Q  32 aacatgagccatatgcaaattcacttcattcctagacctatatgaatcccagtaccggtttctaattaacatttgtatgtcagagttgtgtt 123  Q
    |||||||| ||||||||||| || ||  ||||||||| |||||| ||||||||||  ||||||||| || |||||||||| |||||||||||    
T  25583093 aacatgagacatatgcaaatgcattttgttcctagacttatatgcatcccagtacatgtttctaatcaaaatttgtatgttagagttgtgtt 25583002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 39891005 - 39891116
Alignment:
Q  48 aaattcacttcattccta-gacctatatgaatcccagtaccggtttctaattaacatttgtatgtcagagttgtgtttatgatcacacatacaacctaat 146  Q
    ||||||| |||||||||| |||||||||| |  |  |||||| |||||||| ||||||||||||| |||||||||||   || || ||||||| | ||||    
T  39891005 aaattcaattcattcctaagacctatatgcacgctggtaccgttttctaatcaacatttgtatgtaagagttgtgttaccgaacatacatacatcataat 39891104  T
Q  147 caacatttgtat 158  Q
    ||||||||||||    
T  39891105 caacatttgtat 39891116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 39891187 - 39891132
Alignment:
Q  133 acatacaacctaatcaacatttgtatgttagatttgtgttactaaacataaataca 188  Q
    ||||||| | |||||||||||||||||| ||| ||||||||||||||||| |||||    
T  39891187 acatacatcataatcaacatttgtatgtcagagttgtgttactaaacatagataca 39891132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 24146180 - 24146124
Alignment:
Q  19 atcatatatagccaacatgagccatatgcaaattcacttcattcctagacctatatg 75  Q
    |||||||| | | |||||||||||||||||||| |||||  ||||||||||||||||    
T  24146180 atcatatacacctaacatgagccatatgcaaatacactttgttcctagacctatatg 24146124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 32946594 - 32946646
Alignment:
Q  142 ctaatcaacatttgtatgttagatttgtgttactaaacataaatacaacattc 194  Q
    ||||||||||||||||||| |||  ||||||||| |||||| |||||||||||    
T  32946594 ctaatcaacatttgtatgtcagagctgtgttactgaacatacatacaacattc 32946646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 29482438 - 29482481
Alignment:
Q  32 aacatgagccatatgcaaattcacttcattcctagacctatatg 75  Q
    |||||||||||||||||||| |||||  ||||||||||||||||    
T  29482438 aacatgagccatatgcaaatacactttgttcctagacctatatg 29482481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 17614011 - 17614182
Alignment:
Q  32 aacatgagccatatgcaaattcacttcattcctagacctatatgaatcccagtaccggtttctaattaacatttgtatgtcagagttgtgtttatgatca 131  Q
    ||||||| |||||||||||| |||||| ||||||| |||||||| ||||| ||||| ||||||||| |||||||||||||||||||| ||||  ||| ||    
T  17614011 aacatgatccatatgcaaatacacttcgttcctaggcctatatgcatcccggtaccagtttctaatcaacatttgtatgtcagagttatgttactgagca 17614110  T
Q  132 cacatacaacctaatcaacatttgtatgttagatttgtgttactaaacataaatacaacattcgtcattcgt 203  Q
     ||||||| ||||||||| |||| | ||| ||| || ||||| | |||||| |||||||||||||| |||||    
T  17614111 tacatacatcctaatcaatatttatgtgtcagagttatgttattgaacatacatacaacattcgtccttcgt 17614182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 20946910 - 20947019
Alignment:
Q  32 aacatgagccatatgcaaattcacttcattcctagacctatatgaatcccagtaccggtttctaattaacatttgtatgtcagagttgtgtttatgatca 131  Q
    |||||||| ||||||||||| || ||  |||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| |||||| ||  ||| ||    
T  20946910 aacatgagacatatgcaaatgcattttgttcctagacctatatgcatcccggtaccggtttctaatcaacatttgtatgtcatagttgtattactgaaca 20947009  T
Q  132 cacatacaac 141  Q
     |||||||||    
T  20947010 tacatacaac 20947019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 20946971 - 20947030
Alignment:
Q  142 ctaatcaacatttgtatgttagatttgtgttactaaacataaatacaacattcgtcattc 201  Q
    ||||||||||||||||||| | | |||| ||||| |||||| ||||||||||||||||||    
T  20946971 ctaatcaacatttgtatgtcatagttgtattactgaacatacatacaacattcgtcattc 20947030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 22561218 - 22561378
Alignment:
Q  44 atgcaaattcacttcattcctagacctatatgaatcccagtaccggtttctaattaacatttgtatgtcagagttgtgtttatgatcacacatac----a 139  Q
    |||||||| |||||| || ||||||||||||| ||||  |||||| |||||||| |||||||||||||||| ||||||||  | | || ||||||    |    
T  22561218 atgcaaatgcacttcgtttctagacctatatgcatcctggtaccgatttctaatcaacatttgtatgtcagggttgtgttactaaacatacatacataaa 22561317  T
Q  140 acctaatcaacatttgtatgttagatttgtgttactaaacataaatacaacattcgtcatt 200  Q
     |||||||||||||||||||| ||| |||||||||| |||| | ||||| |||||||||||    
T  22561318 tcctaatcaacatttgtatgtcagagttgtgttactgaacaaacatacatcattcgtcatt 22561378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 19464877 - 19464786
Alignment:
Q  32 aacatgagccatatgcaaattcacttcattcctagacctatatgaatcccagtaccggtttctaattaacatttgtatgtcagagttgtgtt 123  Q
    |||||||| ||||||||||| |||||  ||||||||||| |||| ||||| ||| ||||||||||| |||||||||||||||||||||||||    
T  19464877 aacatgagacatatgcaaatgcactttgttcctagacctgtatgcatcccggtatcggtttctaatcaacatttgtatgtcagagttgtgtt 19464786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 16933007 - 16932909
Alignment:
Q  43 tatgcaaattcacttcattcctagacctatatgaatcccagtaccggtttctaattaacatttgtatgtcagagttgtgtttatgatcacacatacaac 141  Q
    ||||||||| |||||| |||||||||||||||| |||| |||| | ||||||||| |||||||||||||||||||||| ||  ||| || |||||||||    
T  16933007 tatgcaaatacacttcgttcctagacctatatgcatcctagtatcagtttctaatcaacatttgtatgtcagagttgtattactgaacatacatacaac 16932909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 19464816 - 19464757
Alignment:
Q  142 ctaatcaacatttgtatgttagatttgtgttactaaacataaatacaacattcgtcattc 201  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||    
T  19464816 ctaatcaacatttgtatgtcagagttgtgttactaaacatacatacaacattcgtcattc 19464757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 16932957 - 16932899
Alignment:
Q  142 ctaatcaacatttgtatgttagatttgtgttactaaacataaatacaacattcgtcatt 200  Q
    ||||||||||||||||||| ||| |||| ||||| |||||| |||||||||||||||||    
T  16932957 ctaatcaacatttgtatgtcagagttgtattactgaacatacatacaacattcgtcatt 16932899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 201
Target Start/End: Original strand, 20178701 - 20178833
Alignment:
Q  69 ctatatgaatcccagtaccggtttctaattaacatttgtatgtcagagttgtgtttatgatcacacatacaacctaatcaacatttgtatgttagatttg 168  Q
    ||||||| || ||| ||| | |||||||| ||||||||||||||||| |||||||   |  || ||||||| |||||||||  ||||||||| |   |||    
T  20178701 ctatatgcatgccattactgttttctaatcaacatttgtatgtcagatttgtgttgccggacatacatacatcctaatcaatgtttgtatgtcaacgttg 20178800  T
Q  169 tgttactaaacataaatacaacattcgtcattc 201  Q
    ||||||| |||||| || || |||| |||||||    
T  20178801 tgttactgaacatacatgcatcatttgtcattc 20178833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 17269 - 17367
Alignment:
Q  43 tatgcaaattcacttcattcctagacctatatgaatcccagtaccggtttctaattaacatttgtatgtcagagttgtgtttatgatcacacatacaac 141  Q
    ||||||||| |||||| |||||||||||||||| |||| |||| | ||||||||| |||||||||||||||||||||| ||  ||| || |||||||||    
T  17269 tatgcaaatacacttcgttcctagacctatatgcatcctagtatcagtttctaatcaacatttgtatgtcagagttgtattactgaacatacatacaac 17367  T

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Target: scaffold0103; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 17319 - 17377
Alignment:
Q  142 ctaatcaacatttgtatgttagatttgtgttactaaacataaatacaacattcgtcatt 200  Q
    ||||||||||||||||||| ||| |||| ||||| |||||| |||||||||||||||||    
T  17319 ctaatcaacatttgtatgtcagagttgtattactgaacatacatacaacattcgtcatt 17377  T

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Target: scaffold0512 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 7455 - 7527
Alignment:
Q  133 acatacaacctaatcaacatttgtatgttagatttgtgttactaaacataaatacaacattcgtcattcgtca 205  Q
    ||||||| |||||||||||||||||||||||| || ||||||| |||||| ||||| |||||||| |||||||    
T  7455 acatacatcctaatcaacatttgtatgttagagttatgttactgaacatacatacatcattcgtccttcgtca 7527  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 31139225 - 31139142
Alignment:
Q  32 aacatgagccatatgcaaattcacttcattcctagacctatatgaatcccagtaccggtttctaattaacatttgtatgtcaga 115  Q
    |||||||  ||||||| | | |||||||||||||||| |||||| ||||| |||||||||||| || |||||||||||||||||    
T  31139225 aacatgatacatatgctattacacttcattcctagacttatatgcatcccggtaccggtttctgatcaacatttgtatgtcaga 31139142  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 188
Target Start/End: Complemental strand, 51134083 - 51133980
Alignment:
Q  84 taccggtttctaattaacatttgtatgtcagagttgtgtttatgatcacacatacaacctaatcaacatttgtatgttagatttgtgttactaaacataa 183  Q
    ||||| |||||||| |||||| |||||| |||||||||||   || || ||||||| | |||||||||||||||||| ||| |||||||||| ||||||     
T  51134083 taccgttttctaatcaacatt-gtatgtaagagttgtgttaccgaacatacatacatcataatcaacatttgtatgtcagagttgtgttactgaacatac 51133985  T
Q  184 ataca 188  Q
    |||||    
T  51133984 ataca 51133980  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 13561123 - 13561064
Alignment:
Q  142 ctaatcaacatttgtatgttagatttgtgttactaaacataaatacaacattcgtcattc 201  Q
    ||||||||||||||||||| ||| || ||||||| |||||| ||||||||||||||||||    
T  13561123 ctaatcaacatttgtatgtcagagttctgttactgaacatacatacaacattcgtcattc 13561064  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 13561139 - 13561075
Alignment:
Q  77 atcccagtaccggtttctaattaacatttgtatgtcagagttgtgtttatgatcacacatacaac 141  Q
    ||||| ||||||||||||||| |||||||||||||||||||| ||||  ||| || |||||||||    
T  13561139 atcccggtaccggtttctaatcaacatttgtatgtcagagttctgttactgaacatacatacaac 13561075  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 51133733 - 51133650
Alignment:
Q  105 tgtatgtcagagttgtgtttatgatcacacatacaacctaatcaacatttgtatgttagatttgtgttactaaacataaataca 188  Q
    ||||||| |||||||||||   || || ||||||| | |||||||||||||||||| ||| |||||||||| |||||| |||||    
T  51133733 tgtatgtaagagttgtgttaccgaacatacatacatcataatcaacatttgtatgtcagagttgtgttactgaacatacataca 51133650  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 51135940 - 51135894
Alignment:
Q  142 ctaatcaacatttgtatgttagatttgtgttactaaacataaataca 188  Q
    ||||||||||||||||||||||| |||||||||| |||||| |||||    
T  51135940 ctaatcaacatttgtatgttagagttgtgttactgaacatacataca 51135894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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