View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_1D_low_34 (Length: 214)
Name: NF1623_1D_low_34
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_1D_low_34 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0003 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 24493525 - 24493720
Alignment:
| Q |
19 |
atcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagccaaacaaaaagtatttgttggtcacaaaacatccttta |
118 |
Q |
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| T |
24493525 |
atcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagccaaacaaaaagtatttgttggtcacaaaacatccttta |
24493624 |
T |
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| Q |
119 |
ccatcatcgcttgaacctacatgtgtatcacaagcaatggcttcttctgaatggcgtgccgccatggcatcagaatttaatgcattgatgcaacag |
214 |
Q |
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| T |
24493625 |
ccatcatcgcttgaacctacatgtgtatcacaagcaatggcttcttctgaatggtgtgccgccatggcatcagaatttaatgcattgatgcaacag |
24493720 |
T |
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Target: scaffold0003 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 92975 - 93070
Alignment:
| Q |
119 |
ccatcatcgcttgaacctacatgtgtatcacaagcaatggcttcttctgaatggcgtgccgccatggcatcagaatttaatgcattgatgcaacag |
214 |
Q |
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| T |
92975 |
ccatcatcgcttgaacctacatgtgtatcacaagcaatggcttcttctgaatggagtgccgccatggcatcagaatttaatgcattgatgcaacag |
93070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 92890 - 92951
Alignment:
| Q |
19 |
atcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagc |
80 |
Q |
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| T |
92890 |
atcaacgtcatcctctgaatatttgagacccatcacacgatccatgcataacatacacaagc |
92951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 178
Target Start/End: Original strand, 92945 - 92976
Alignment:
| Q |
147 |
cacaagcaatggcttcttctgaatggcgtgcc |
178 |
Q |
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| T |
92945 |
cacaagcaatggcttcttctgaatggcgtgcc |
92976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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