View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1623_1D_low_37 (Length: 211)

Name: NF1623_1D_low_37
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1623_1D_low_37
NF1623_1D_low_37
[»] chr4 (8 HSPs)
chr4 (11-205)||(6646089-6646283)
chr4 (45-180)||(6627683-6627818)
chr4 (72-174)||(6506662-6506764)
chr4 (72-174)||(6503155-6503257)
chr4 (72-171)||(6737589-6737688)
chr4 (105-179)||(6810758-6810832)
chr4 (72-199)||(6551346-6551473)
chr4 (137-174)||(6523885-6523922)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 6646089 - 6646283
Alignment:
Q  11 tgttttttgggatgatgagaagcttggaagcggtgatcgagaaataccaacctcagttctcaatgttatagaagattgcaaagttgctgtaatagtattt 110  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||    
T  6646089 tgttttctgggatgatgagaagcttggaagcggtgatcgaggaataccaacctcaattttgaatgttatagaagattgcaaagttgctgtaatagtattt 6646188  T
Q  111 tcaagaaattatgttaattcaagatcgtgtcttcaagaatttgagaagataaccgagtgttgcctaaccacaagtggtcttattgttcttccagt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6646189 tcaagaaattatgttaattcaagatcgtgtcttcaagaatttgagaagataaccgagtgttgcctaaccacaagtggtcttattgttcttccagt 6646283  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 45 - 180
Target Start/End: Complemental strand, 6627818 - 6627683
Alignment:
Q  45 gatcgagaaataccaacctcagttctcaatgttatagaagattgcaaagttgctgtaatagtattttcaagaaattatgttaattcaagatcgtgtcttc 144  Q
    |||||||||| ||||||||| || ||||||||||||  |||||||||||||  |||||| |||||||||||| | ||| | |||||||| ||||||||||    
T  6627818 gatcgagaaaaaccaacctctgtgctcaatgttataagagattgcaaagtttttgtaattgtattttcaagagactatttcaattcaaggtcgtgtcttc 6627719  T
Q  145 aagaatttgagaagataaccgagtgttgcctaacca 180  Q
    | |||||| | || ||||| |||||||||| |||||    
T  6627718 atgaatttaaaaaaataactgagtgttgccgaacca 6627683  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 6506764 - 6506662
Alignment:
Q  72 aatgttatagaagattgcaaagttgctgtaatagtattttcaagaaattatgttaattcaagatcgtgtcttcaagaatttgagaagataaccgagtgtt 171  Q
    |||||||| | ||||||| || | | |||||| ||||||||||  |||||| |||||||||||| ||||||||||||||| ||||| |||||| ||||||    
T  6506764 aatgttattggagattgcgaaatagttgtaattgtattttcaaagaattattttaattcaagatggtgtcttcaagaattggagaaaataacccagtgtt 6506665  T
Q  172 gcc 174  Q
    |||    
T  6506664 gcc 6506662  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 6503257 - 6503155
Alignment:
Q  72 aatgttatagaagattgcaaagttgctgtaatagtattttcaagaaattatgttaattcaagatcgtgtcttcaagaatttgagaagataaccgagtgtt 171  Q
    |||||||||||||||||| |  ||||||| ||  |||||||||  ||||||  ||| ||||||| ||||||||||||||| ||||| |||||| ||||||    
T  6503257 aatgttatagaagattgcgagattgctgtgatcatattttcaaagaattatactaaatcaagatggtgtcttcaagaattggagaaaataacccagtgtt 6503158  T
Q  172 gcc 174  Q
    |||    
T  6503157 gcc 6503155  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 6737589 - 6737688
Alignment:
Q  72 aatgttatagaagattgcaaagttgctgtaatagtattttcaagaaattatgttaattcaagatcgtgtcttcaagaatttgagaagataaccgagtgtt 171  Q
    ||||| || |||||||||||||||| |||| | ||||| ||||  ||||||  |||||| |||| ||||||||||||||| ||||| ||||| |||||||    
T  6737589 aatgtgattgaagattgcaaagttgttgtagtcgtattatcaaagaattatactaattctagatggtgtcttcaagaattggagaaaataactgagtgtt 6737688  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 6810758 - 6810832
Alignment:
Q  105 gtattttcaagaaattatgttaattcaagatcgtgtcttcaagaatttgagaagataaccgagtgttgcctaacc 179  Q
    |||||||||| |||||||| |||||||| |  ||||||||||||||| ||||| |||||||| ||||||| ||||    
T  6810758 gtattttcaataaattatgctaattcaacacggtgtcttcaagaattggagaaaataaccgaatgttgccgaacc 6810832  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 6551473 - 6551346
Alignment:
Q  72 aatgttatagaagattgcaaagttgctgtaatagtattttcaagaaattatgttaattcaagatcgtgtcttcaagaatttgagaagataaccgagtgtt 171  Q
    |||||||||| | | |||||| ||| ||||||  |||||||||||||||| | |||| |||||   ||||| ||||||||  |||| ||||| || ||||    
T  6551473 aatgttataggaaagtgcaaaattgttgtaatcatattttcaagaaattaggctaatacaagacgatgtctacaagaattgaagaaaataactgaatgtt 6551374  T
Q  172 gcctaaccacaagtggtcttattgttct 199  Q
    ||| ||| |||  |||||||| ||||||    
T  6551373 gccgaacaacatctggtcttactgttct 6551346  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 6523922 - 6523885
Alignment:
Q  137 gtgtcttcaagaatttgagaagataaccgagtgttgcc 174  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  6523922 gtgtcttcaagaattcgagaaaataaccgagtgttgcc 6523885  T

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