View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_1D_low_39 (Length: 204)
Name: NF1623_1D_low_39
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_1D_low_39 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 8294930 - 8295127
Alignment:
| Q |
7 |
catcagaattaagcataattggcaaccattgtttatgttttctagccaaagatgaagcgttgagaaagttatactttatttatacattctgcaatgcgga |
106 |
Q |
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| T |
8294930 |
catcagaattaagcataattggcaaccattgtttatgttttctagccaaagatgaagcgttgagagagttatacttcatttatacgttctgcaatgcgga |
8295029 |
T |
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| Q |
107 |
gtttgaaactcaagatcttgtctctgacagtttgataattacctcggcatttgttaagccacctcgggttactggctttgaattgttcaaactggtca |
204 |
Q |
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| T |
8295030 |
gtttgaaactcaagatcttgtctctgacagtttgataattacctcggcatttgttaagccacctcgggttactggctttgaattgttcaaactggtca |
8295127 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 201
Target Start/End: Complemental strand, 25763495 - 25763337
Alignment:
| Q |
43 |
gttttctagccaaagatgaagcgttgagaaagttatactttatttatacattctgcaatgcggagtttgaaactcaagatcttgtctctgacagtttgat |
142 |
Q |
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| T |
25763495 |
gttttctagccaaagataaaacgttaagagagttatatttcatttctatgttctataatggtgagattgaaactcaacaacatgtctctgaccgtttcaa |
25763396 |
T |
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| Q |
143 |
aattacctcggcatttgttaagccacctcgggttactggctttgaattgttcaaactgg |
201 |
Q |
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| T |
25763395 |
agtcatctcagcattttcaaagccacctcaggttaccagctttgaagtgttcaagctgg |
25763337 |
T |
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