View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1623_1D_low_4 (Length: 413)
Name: NF1623_1D_low_4
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_1D_low_4 |
 | |
|
| [»] scaffold0048 (1 HSPs) |
| | |
|
| [»] scaffold0512 (1 HSPs) |
| | |
|
| [»] scaffold1405 (1 HSPs) |
| | |
|
| [»] scaffold0524 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0048 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 75951 - 76349
Alignment:
| Q |
1 |
agcatgaattggttaatatggtggacaacaatataagaagagatatggggtgatggtttagaatagtggaggatgatataggtagattccttagaatagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
75951 |
agcatgaattggttaatatggtggacaacaatataagaagagatatggggtgatggtttagaatagtggaggatgatgtaggtagattctttagaatagt |
76050 |
T |
|
| Q |
101 |
aatgagctcaatatcgtagtggatagaagagtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
76051 |
aatgagctcaatatcgtagtggatagaagagtgtagaaccaaaatgaacaaatagaataaaaaagaggtttaaggtaatgaagatgctaggtggagaaat |
76150 |
T |
|
| Q |
201 |
aagacaaagataattggaaatagaaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaat |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
76151 |
aagacaaagataattgaaaatagaaaggcgtaagttaaagtaagggataacgttagaaataatgataatggtgaggtaaggaccttaagttaaaatgaat |
76250 |
T |
|
| Q |
301 |
agtgtgtggtcgatttaagatgatggatgatgttgagaaaactaataagacgaattagaacggggtaagaaagttctatgttgagtaatggatgatgtc |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
76251 |
agtgtgtggtcgatttaagatgatggatgatgttgagaaaactgataagacgaattagaacggggaaagaaagttctatgttgagtaatgaatgatgtc |
76349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 3 - 271
Target Start/End: Complemental strand, 21494926 - 21494657
Alignment:
| Q |
3 |
catgaattggttaatatggtggacaacaat-ataagaagagatatggggtgatggtttagaatagtggaggatgatataggtagattccttagaatagca |
101 |
Q |
| |
|
||||||| ||||||||||||| || || || ||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||| | |
|
|
| T |
21494926 |
catgaataggttaatatggtgaacgacgattataagaagagatatgtagtgatggtttagaatagtggaggatgatgtaggtagatttcttagaatagta |
21494827 |
T |
|
| Q |
102 |
atgagctcaatatcgtagtggatagaagagtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaata |
201 |
Q |
| |
|
|||||||||| || ||||| || ||||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||| | | |||||| ||||||| |
|
|
| T |
21494826 |
atgagctcaagatagtagtagacagaagagtgtagagccagaatgaacaggtagaatgatgaagtagtttaaggtaatgaaaatgttaggtgaagaaata |
21494727 |
T |
|
| Q |
202 |
agacaaagataattggaaatagaaaggcgtaggttaaagtaagggataacgttagaaataatgataatgg |
271 |
Q |
| |
|
|||| ||| |||| |||||||||||| || ||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
21494726 |
agacgaaggtaatcttaaatagaaaggcataagttaaagtaagggatgatgttagaaaaaatgataatgg |
21494657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 140 - 320
Target Start/End: Complemental strand, 20947858 - 20947678
Alignment:
| Q |
140 |
caaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcgtaggttaaa |
239 |
Q |
| |
|
|||||| ||||| ||||||| |||| |||||||||||||||||| |||||||| ||||||||||| || ||||||||||||| ||||||||| |||||| |
|
|
| T |
20947858 |
caaaattaacaagtagaatggtgaaatggtttaaggtaatgaagatgctaggtgaagaaataagacgaacataattggaaatataaaggcgtaagttaaa |
20947759 |
T |
|
| Q |
240 |
gtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaaga |
320 |
Q |
| |
|
||||| ||||| |||||||| | |||||||||||| ||| || ||| ||||||||||| | |||||||| |||||||| |
|
|
| T |
20947758 |
gtaagagataatgttagaaacattgataatggtgaaataacgaacttaggttaaaatgaaatgagtgtggtcaatttaaga |
20947678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 294
Target Start/End: Original strand, 21499601 - 21499863
Alignment:
| Q |
32 |
tataagaagagatatggggtgatggtttagaatagtggaggatgatataggtagattccttagaatagcaatgagctcaatatcgtagtggatagaagag |
131 |
Q |
| |
|
||||||| |||| ||||||||||| ||| |||||| || ||||||| |||| ||||||||| ||||| |||||| || || | ||| |||||||||| |
|
|
| T |
21499601 |
tataagatgagagatggggtgatgacttaaaatagttgatgatgataaaggtggattccttataatagtaatgagtctaagatagaagtagatagaagag |
21499700 |
T |
|
| Q |
132 |
tgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggt-aatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcg |
230 |
Q |
| |
|
|||| ||||||| |||||| || | || |||| |||||||| | |||||||| |||||| ||| ||||||| | |||||| |||||| |||| | |
|
|
| T |
21499701 |
tgtatgaccaaaaggaacaattaaattggggaagtggtttaagatgaatgaagatattaggtgaagagataagaccagcgtaattgaaaataggaaggtg |
21499800 |
T |
|
| Q |
231 |
taggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaa |
294 |
Q |
| |
|
|| |||||||| | || ||| | |||| ||||||||||||||||||||| ||| ||| |||||| |
|
|
| T |
21499801 |
taagttaaagtga-ggttaatgctagagataatgataatggtgaggtaaagactttaggttaaa |
21499863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 131 - 307
Target Start/End: Original strand, 22499208 - 22499384
Alignment:
| Q |
131 |
gtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcg |
230 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| | |
|
|
| T |
22499208 |
gtgtagagccaaaatgaaaaagtagaatgatgaagtggtttaaggtaatgaagatgctaggtgaagaaataagacaaaggtaattggaaatagaaaggtg |
22499307 |
T |
|
| Q |
231 |
taggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgt |
307 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||| |||||||||| ||| || ||||||||| |||||||| |||| |
|
|
| T |
22499308 |
taagttaaagtaagggataatgttagaaataataataatggtgaaataacgatcttaagttaagatgaatagagtgt |
22499384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 134 - 334
Target Start/End: Original strand, 31138608 - 31138808
Alignment:
| Q |
134 |
tagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcgtag |
233 |
Q |
| |
|
||||||||| |||||||| |||| || ||||| |||||||||||||||||| ||||| ||||||||||||| ||| ||||| |||||| ||||| ||| |
|
|
| T |
31138608 |
tagaaccaacatgaacaagtagagtggtgaagtggtttaaggtaatgaagatgctagtcggagaaataagacgaaggtaatttgaaatataaaggtgtaa |
31138707 |
T |
|
| Q |
234 |
gttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaagatgatggatgatgt |
333 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||| || |||||||||||| ||||| ||||| |||| |||||| ||| ||||||| |
|
|
| T |
31138708 |
gttaaagtaagggatactattagaaataatgataatggtgaagtaacgaacttaagttaaaataaatagagtgtgctcgaattaagaggataaatgatgt |
31138807 |
T |
|
| Q |
334 |
t |
334 |
Q |
| |
|
| |
|
|
| T |
31138808 |
t |
31138808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 131 - 364
Target Start/End: Complemental strand, 22562277 - 22562044
Alignment:
| Q |
131 |
gtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcg |
230 |
Q |
| |
|
||||||| |||||||||||| ||| ||| ||||| ||||||||||||| |||| | |||||| || |||||||| ||| |||||||||||| || | | |
|
|
| T |
22562277 |
gtgtagattcaaaatgaacaagtaggatggtgaagtggtttaaggtaattaagatgttaggtgaaggaataagacgaaggtaattggaaatataagtgtg |
22562178 |
T |
|
| Q |
231 |
taggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaagatgatggatga |
330 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||| ||||||||| |||| ||| |||||| |||||||| | ||||||||||||||||| ||| ||| | |
|
|
| T |
22562177 |
taagttaaagtaagggataatgttagaaataatgttaatggtgaagtaacgaccttaagtgaaaatgaacaaagtgtggtcgatttaagaggatagataa |
22562078 |
T |
|
| Q |
331 |
tgttgagaaaactaataagacgaattagaacggg |
364 |
Q |
| |
|
|||| ||| || | |||| | ||| ||||||||| |
|
|
| T |
22562077 |
tgttaagagaattgataaaatgaaatagaacggg |
22562044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0512 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0512
Description:
Target: scaffold0512; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 131 - 320
Target Start/End: Complemental strand, 8277 - 8088
Alignment:
| Q |
131 |
gtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcg |
230 |
Q |
| |
|
||||||| ||||||||||||| || || | ||||| ||||||||||||||| || |||||||| || |||||||| || |||||||||||| ||||||| |
|
|
| T |
8277 |
gtgtagagccaaaatgaacaagtaaaacggtgaagtggtttaaggtaatgatgatgctaggtgaaggaataagacgaacgtaattggaaatataaaggcg |
8178 |
T |
|
| Q |
231 |
taggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaaga |
320 |
Q |
| |
|
|| ||||||||||||||| |||||||| |||||||||||||| |||| ||| ||| ||||||||||| | ||||||| ||||||||| |
|
|
| T |
8177 |
taagttaaagtaagggatggtgttagaaagaatgataatggtgaagtaacgaccttaggttaaaatgaaatgggtgtggtagatttaaga |
8088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 131 - 360
Target Start/End: Original strand, 12347925 - 12348154
Alignment:
| Q |
131 |
gtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcg |
230 |
Q |
| |
|
||||||| ||||||||||||| ||| ||| ||||| |||||||||||||||||| | |||| | ||||||||||| ||| ||||| ||||| |||||| |
|
|
| T |
12347925 |
gtgtagagccaaaatgaacaagtaggatggtgaagtggtttaaggtaatgaagatgttaggcgaagaaataagacgaaggtaattttaaatataaaggca |
12348024 |
T |
|
| Q |
231 |
taggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaagatgatggatga |
330 |
Q |
| |
|
|| |||||||||||||| | |||||||||||| ||| |||||| || | ||| |||||||||||||||||| ||| | | |||||||| ||| ||||| |
|
|
| T |
12348025 |
taagttaaagtaagggacatggttagaaataataatattggtgaagtgacgaccttaagttaaaatgaatagagtgagaccaatttaagaggatagatga |
12348124 |
T |
|
| Q |
331 |
tgttgagaaaactaataagacgaattagaa |
360 |
Q |
| |
|
|||| ||| || | |||||||||| ||||| |
|
|
| T |
12348125 |
tgttaagagaattgataagacgaaatagaa |
12348154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 131 - 320
Target Start/End: Original strand, 9694150 - 9694337
Alignment:
| Q |
131 |
gtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcg |
230 |
Q |
| |
|
||||||| ||||||| ||||| ||||||| ||||| |||||||||||||||||| |||||||| || ||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
9694150 |
gtgtagagccaaaattaacaagtagaatggtgaagtggtttaaggtaatgaagatgctaggtgaaggaataagacaaacataattgaaaatataaaggcg |
9694249 |
T |
|
| Q |
231 |
taggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaaga |
320 |
Q |
| |
|
|| ||||||||| |||| ||| |||| |||| ||||||||| |||| || ||| |||||||||| | || ||||||||||||||| |
|
|
| T |
9694250 |
taaattaaagtaaaggatgttgtttgaaagaatggtaatggtgaagtaacgaacttaggttaaaatga--aatgagtggtcgatttaaga |
9694337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 130 - 299
Target Start/End: Original strand, 11801336 - 11801505
Alignment:
| Q |
130 |
agtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggc |
229 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||| ||||| |||||||||||||||||| |||||||| || |||||||| || |||||| ||||| |||||| |
|
|
| T |
11801336 |
agtgtagatccaaaattaacaagtagaatggtgaagtggtttaaggtaatgaagatgctaggtgaaggaataagacgaacgtaattgaaaatataaaggc |
11801435 |
T |
|
| Q |
230 |
gtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaa |
299 |
Q |
| |
|
||| |||||| |||||||| | |||||||| | ||||||||||| |||| || ||| ||||||||||| |
|
|
| T |
11801436 |
gtaagttaaaataagggatgatgttagaaagatggataatggtgaagtaacgaacttaggttaaaatgaa |
11801505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1405 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold1405
Description:
Target: scaffold1405; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 140 - 320
Target Start/End: Complemental strand, 809 - 629
Alignment:
| Q |
140 |
caaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcgtaggttaaa |
239 |
Q |
| |
|
|||||| ||||||||||||| |||| |||||||||||||||||| |||||||| || |||||||| || |||||| ||||| ||||||||| |||||| |
|
|
| T |
809 |
caaaattaacaaatagaatggtgaaatggtttaaggtaatgaagatgctaggtgaaggaataagacgaacgtaattgcaaatataaaggcgtaagttaaa |
710 |
T |
|
| Q |
240 |
gtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaaga |
320 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||| |||| | ||| ||||||||||| | |||||||| |||||||| |
|
|
| T |
709 |
gtaagggataatgttagaaacattgataatggtgaagtaaaaaacttaggttaaaatgaaatgagtgtggtcaatttaaga |
629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 131 - 320
Target Start/End: Original strand, 13560527 - 13560714
Alignment:
| Q |
131 |
gtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcg |
230 |
Q |
| |
|
||||||| ||||||| ||||| ||||||| ||||| |||||||||||||||||| |||||||| || ||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
13560527 |
gtgtagagccaaaattaacaagtagaatggtgaagtggtttaaggtaatgaagatgctaggtgaaggaataagacaaacataattgaaaatataaaggcg |
13560626 |
T |
|
| Q |
231 |
taggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaaga |
320 |
Q |
| |
|
|| ||||||||| |||| ||| |||| |||| ||||||||| |||| || ||| |||||||||| | || ||||||||||||||| |
|
|
| T |
13560627 |
taaattaaagtaaaggatgttgtttgaaagaatggtaatggtgaagtaacgaacttaggttaaaatga--aatgagtggtcgatttaaga |
13560714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 131 - 320
Target Start/End: Original strand, 25582447 - 25582636
Alignment:
| Q |
131 |
gtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcg |
230 |
Q |
| |
|
||||||| |||||| ||||| ||||||| ||| |||||||||||||||||| |||||||| || ||||| | || ||||||| ||||| ||||||| |
|
|
| T |
25582447 |
gtgtagagtcaaaattaacaagtagaatggagaaatggtttaaggtaatgaagatgctaggtgaaggaataacatgaacataattgaaaatataaaggcg |
25582546 |
T |
|
| Q |
231 |
taggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaaga |
320 |
Q |
| |
|
|| ||||||||||||||||| |||||||| | |||||||| ||| |||| | ||| ||||||||||| | ||| |||| |||||||| |
|
|
| T |
25582547 |
taagttaaagtaagggataatgttagaaacattgataatgatgaagtaacaaacttatgttaaaatgaaatgagtgaggtcaatttaaga |
25582636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 10190226 - 10190111
Alignment:
| Q |
180 |
gaagaagctaggtggagaaataagacaaagataattggaaatagaaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaa |
279 |
Q |
| |
|
||||| |||||||| || ||||||| || ||||||||| ||| |||| ||| ||||| |||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
10190226 |
gaagatgctaggtgaagggataagacgaatgtaattggaagtaggaaggtgtaagttaacgtaaaggatattgttagaaataatgataatggtgaggtaa |
10190127 |
T |
|
| Q |
280 |
ggacattaagttaaaa |
295 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
10190126 |
agactttaagttaaaa |
10190111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 23907933 - 23907871
Alignment:
| Q |
131 |
gtgtagaaccaaaatgaacaaatagaatgatgaagaggtttaaggtaatgaagaagctaggtg |
193 |
Q |
| |
|
||||||| ||||||| ||||| ||||||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
23907933 |
gtgtagagccaaaattaacaagtagaatggtgaagtggtttaaggtaatgaagatgctaggtg |
23907871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 338
Target Start/End: Complemental strand, 17458779 - 17458702
Alignment:
| Q |
261 |
aatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggtcgatttaagatgatggatgatgttgaga |
338 |
Q |
| |
|
||||||| |||||| |||| ||| ||| ||||||||||| | ||||||||||||||||| ||| |||||| |||||| |
|
|
| T |
17458779 |
aatgatattggtgaagtaaagaccttaggttaaaatgaaacgagtgtggtcgatttaagaggatagatgatattgaga |
17458702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 320
Target Start/End: Complemental strand, 22924771 - 22924662
Alignment:
| Q |
211 |
taattggaaatagaaaggcgtaggttaaagtaagggataacgttagaaataatgataatggtgaggtaaggacattaagttaaaatgaatagtgtgtggt |
310 |
Q |
| |
|
|||| ||||||| ||||||||| ||||| ||| ||||||| ||||| | ||||||| |||||| | || ||| ||| ||| ||||||| | ||||||| |
|
|
| T |
22924771 |
taatcggaaatataaaggcgtaagttaacgtaggggataatgttagtatgaatgatattggtgaagcaacgaccttatgtttaaatgaaatgagtgtggt |
22924672 |
T |
|
| Q |
311 |
cgatttaaga |
320 |
Q |
| |
|
|||||||||| |
|
|
| T |
22924671 |
cgatttaaga |
22924662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0524 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0524
Description:
Target: scaffold0524; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 4062 - 4098
Alignment:
| Q |
234 |
gttaaagtaagggataacgttagaaataatgataatg |
270 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
4062 |
gttaaagtaagggataatgttagaaataataataatg |
4098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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