View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_1D_low_5 (Length: 400)
Name: NF1623_1D_low_5
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_1D_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 26799138 - 26799392
Alignment:
| Q |
18 |
gacatcaaacacaacacggatactgacacgtcgacacagttaatagtttgnnnnnnntaatataattcaatgtaattactatttataagtgtcggtgtaa |
117 |
Q |
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| T |
26799138 |
gacatcaaacacgacacagatactgatacgtcgacacagttaatagtttaaaaaaaataatataattcaatgtaattactatttacaagtgtcggtgtaa |
26799237 |
T |
|
| Q |
118 |
cacgtctaatgctggaaatgtcc-------atagatcagttgttactattactattcattcacatgtgagttttcttgagtctac---atttaccatatg |
207 |
Q |
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||| ||||| | |||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26799238 |
cacacctaatacaagaaatgcccgtgcttcatagatcaattgttactattactattcattcacatgtgagttttcttgagtctacattatttaccatatg |
26799337 |
T |
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| Q |
208 |
tactgccaactaaccatccaaacacagtactgttgtcagtccattcacatgctaa |
262 |
Q |
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|||||||||| ||||||||||| ||||||||||||| || |||||||| ||||| |
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| T |
26799338 |
tactgccaaccaaccatccaaaaacagtactgttgttggttcattcacaagctaa |
26799392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 10219667 - 10219921
Alignment:
| Q |
18 |
gacatcaaacacaacacggatactgacacgtcgacacagttaatagtttgnnnnnnntaatataattcaatgtaattactatttataagtgtcggtgtaa |
117 |
Q |
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| T |
10219667 |
gacatcaaacacgacacagatactgatacgtcgacacagttaatagtttaaaaaaaataatataattcaatgtaattactatttacaagtgtcggtgtaa |
10219766 |
T |
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| Q |
118 |
cacgtctaatgctggaaatgtcc-------atagatcagttgttactattactattcattcacatgtgagttttcttgagtctac---atttaccatatg |
207 |
Q |
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| T |
10219767 |
cacacctaatacaagaaatgcccgtgcttcatagatcaattgttactattactattcattcacatgtgagttttcttgagtctacattatttaccatatg |
10219866 |
T |
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| Q |
208 |
tactgccaactaaccatccaaacacagtactgttgtcagtccattcacatgctaa |
262 |
Q |
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| T |
10219867 |
tactgccaaccaaccatccaaaaacagtactgttgttggttcattcacaagctaa |
10219921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 10125543 - 10125649
Alignment:
| Q |
153 |
ttactattactattcattcacatgtgagttttcttgagtc-tacatttaccatatgtactgccaactaaccatccaaacacagtactgttgtcagtccat |
251 |
Q |
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| T |
10125543 |
ttactattactattcattcacatgtgagttttattgagtcttacctttaccatatgtactg----caaaccatccaaaaacagtactgttgtcggttcat |
10125638 |
T |
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| Q |
252 |
tcacatgctaa |
262 |
Q |
| |
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||| ||||||| |
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| T |
10125639 |
tcatatgctaa |
10125649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 10182888 - 10182994
Alignment:
| Q |
153 |
ttactattactattcattcacatgtgagttttcttgagtc-tacatttaccatatgtactgccaactaaccatccaaacacagtactgttgtcagtccat |
251 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| | ||||||||||| |||||||||||||| || ||| |
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| T |
10182888 |
ttactattactattcattcacatgtgagttttattgagtcttacctttaccatatgtactg----caaaccatccaaaaacagtactgttgtcggttcat |
10182983 |
T |
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| Q |
252 |
tcacatgctaa |
262 |
Q |
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||| ||||||| |
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| T |
10182984 |
tcatatgctaa |
10182994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 304 - 372
Target Start/End: Original strand, 10030921 - 10030989
Alignment:
| Q |
304 |
atatttttcggtaatcatatacttatcaccaaatgattattacatttatctcttttgctgggtaatact |
372 |
Q |
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| T |
10030921 |
atatttttcagcaatcatatacttatcaccaaatgattattacatttatctcttttgttgggtaatact |
10030989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 304 - 372
Target Start/End: Original strand, 10125872 - 10125940
Alignment:
| Q |
304 |
atatttttcggtaatcatatacttatcaccaaatgattattacatttatctcttttgctgggtaatact |
372 |
Q |
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| T |
10125872 |
atatttttcagcaatcatatacttatcaccaaatgattattacatttatctcttttgttgggtaatact |
10125940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 10259337 - 10259443
Alignment:
| Q |
153 |
ttactattactattcattcacatgtgagttttcttgagtc-tacatttaccatatgtactgccaactaaccatccaaacacagtactgttgtcagtccat |
251 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||||| | ||||||||||| |||||||||||||| || ||| |
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| T |
10259337 |
ttactattactactcattcacatgtgagttttattgagtcttacctttaccatatgtactg----caaaccatccaaaaacagtactgttgtcggttcat |
10259432 |
T |
|
| Q |
252 |
tcacatgctaa |
262 |
Q |
| |
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||| ||||||| |
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| T |
10259433 |
tcatatgctaa |
10259443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 10259657 - 10259713
Alignment:
| Q |
316 |
aatcatatacttatcaccaaatgattattacatttatctcttttgctgggtaatact |
372 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
10259657 |
aatcatatacttatcagcaaatgattattacatttatctcttttgttgggtaatact |
10259713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 10030636 - 10030697
Alignment:
| Q |
197 |
tttaccatatgtactgccaactaaccatccaaacacagtactgttgtcagtccattcacatgctaa |
262 |
Q |
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||||||||||||||||| ||| |||||||| |||||||||||||| || |||||| ||||||| |
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| T |
10030636 |
tttaccatatgtactgcaaac----catccaaaaacagtactgttgtcggttcattcagatgctaa |
10030697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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