View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623_1D_low_7 (Length: 390)
Name: NF1623_1D_low_7
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_1D_low_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 14248347 - 14247974
Alignment:
| Q |
17 |
atcaacaaaagacattgagtaaattctactgaattgaatattattggctttgtgcactcatcgtcacaatcgaacaaaattttcctagctagctaattca |
116 |
Q |
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| T |
14248347 |
atcaacaaaagacattgagtaaattctactgaattgaatattcttggctttgtgcactcatcgtcaccatcgaacaaaattttcctagctagctaattca |
14248248 |
T |
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| Q |
117 |
aacaattggacgtcttagaaagtagtcttaataacatagaatttgggacgaagggttgaaagttactcaaccatttgctcatgactgctaagcatgttga |
216 |
Q |
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| T |
14248247 |
aacaattggacgtcttagaaagtagtcttaataacatagaatttgggacgaagggttgaaagttactcaaccatttgctcatgactgctaagcatgttga |
14248148 |
T |
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| Q |
217 |
gttcctatcttagacttcatcttgctccatcccaataagggcgttgaccttggaaaggtcattttggagcctatcagagcaaatggggtgcaacacttag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14248147 |
gttcctatcttagacttcatcttgctccatcccaataagggcgttgaccttggaaaggtcattttggagcctatcagagcaaatggggcgcaacacttag |
14248048 |
T |
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| Q |
317 |
tacaggacgtgaacctacctacccagccacaagactcatctcagcattgagcactaaaaatataacaatatcag |
390 |
Q |
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| T |
14248047 |
tacaggacgtgaacctacctccccagccacaagactcatctcagcattgagcactaaaaatataacaatatcag |
14247974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 14263398 - 14263349
Alignment:
| Q |
214 |
tgagttcctatcttagacttcatcttgctccatcccaataagggcgttga |
263 |
Q |
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| T |
14263398 |
tgagttcctagtttagacttcatgttgctccatcccaattaggtcgttga |
14263349 |
T |
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