View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1623_1D_low_9 (Length: 358)
Name: NF1623_1D_low_9
Description: NF1623_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_1D_low_9 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold0003 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 6 - 358
Target Start/End: Original strand, 24494412 - 24494764
Alignment:
| Q |
6 |
agatgaaagatgcaaagattgtccattcaccgatgtctacatcctctcctcttactaaatctgatggcgcaagtgcagcagatagtacggaatacagaag |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24494412 |
agatgaaagatgcaaagattgtccattcaccgatgtctacatcctctcctcttactaaatctgatggcgcaagtgtagcagatagtacggaatacagaag |
24494511 |
T |
|
| Q |
106 |
cgtcataggggctctacaatatttatccatgacaaggcctgacatagcctacactgtaaataagcttgcacaattcatgcaacatccatcatctacacac |
205 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24494512 |
cgtcataggggctctacaatatttttccatgacaaggcctgacatagcctacactgtaaataagcttgcacaattcatgcaacatccatcatctacacac |
24494611 |
T |
|
| Q |
206 |
tctacatccttgaaaagacttcttcgatatctcaaagccaccatgtttcatggacttcacttgaagcacacttcttctcaaaatctttatgcattcagtg |
305 |
Q |
| |
|
| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24494612 |
tttacagccttgaaaagacttctttgatatctcaaagccaccatgtttcatggacttcacttgaagcacacttcttctcaaaatctttatgcattcagtg |
24494711 |
T |
|
| Q |
306 |
atgccgattgggctggaaatagagatgattatacatccacctctgcacatgtt |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24494712 |
atgccgattgggctggaaatagagatgattatacatccacctctgcacatgtt |
24494764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 6 - 358
Target Start/End: Original strand, 93762 - 94114
Alignment:
| Q |
6 |
agatgaaagatgcaaagattgtccattcaccgatgtctacatcctctcctcttactaaatctgatggcgcaagtgcagcagatagtacggaatacagaag |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
93762 |
agatgaaagatgcaaagattgtccattcaccgatgtctacatcctctcctcttactaaatctgatggcgcaagtgaagcagatagtacggaatacagaag |
93861 |
T |
|
| Q |
106 |
cgtcataggggctctacaatatttatccatgacaaggcctgacatagcctacactgtaaataagcttgcacaattcatgcaacatccatcatctacacac |
205 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
93862 |
cgtcataggggctctacaatatttgtccatgacaaggcctgacatagcctacactgtaaataagtttgcacagttcatgcaatatccatcatctacacac |
93961 |
T |
|
| Q |
206 |
tctacatccttgaaaagacttcttcgatatctcaaagccaccatgtttcatggacttcacttgaagcacacttcttctcaaaatctttatgcattcagtg |
305 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
93962 |
tttacaaccttgaaaagacttcttcgatatctcaaagccaccatgtttcatggacttcacttgaagtgcacttcttctcaaaatctatatgcattcagtg |
94061 |
T |
|
| Q |
306 |
atgccgattgggctggaaatagagatgattatacatccacctctgcacatgtt |
358 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
94062 |
atgccgattgggctggaaatcgagatgattatacatccacctctgcacatgtt |
94114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University