View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1623_2D_high_10 (Length: 629)
Name: NF1623_2D_high_10
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 236 - 614
Target Start/End: Complemental strand, 7904436 - 7904059
Alignment:
| Q |
236 |
gccgccctccatcgagcctcaataacatcgactgtttctctagatccacctcgaatcaaattttaattttaaaatgattattatttcaaaataaaacata |
335 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7904436 |
gccgccctccatcgagcttcaataacatcgactgtttctctagatccacctcgaatcaaattttaattttaaaatgattattatttcaaaataaaacata |
7904337 |
T |
|
| Q |
336 |
tatattatgttcaatggagaaattctttacttcataaattcatttattatgtcctctcnnnnnnnnnnnnnnnncattaattatgtgaatagggtttcct |
435 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7904336 |
tatattatgttcaatggagaaattttttacttcataagttcatttattatgtcctctcaaaacaaaataaaaaacattaattatgtgaatagggtttcct |
7904237 |
T |
|
| Q |
436 |
aatttccaactagtcaaaaaaggtgtattttgtcttgttcaaaaaagtttattttgtcgtgtagattgaaaagtcgtgcttttttcttctctgtagtact |
535 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7904236 |
aatttccaactagtcaaaaaaggggtattttgtcttgttcaaaaaagtttattttgtcgtgtagattgaaaagtcgtgcttttttcttctctgtagtact |
7904137 |
T |
|
| Q |
536 |
agtattctaaaacatgatgatatgcattgaatattttattttgctacttcattcatggtcatgatccattgaatgtgat |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7904136 |
agtattctaaaacatgatgatatgcattgaata-tttattttgctacttcattcatggtcatgatccattgaatgtgat |
7904059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7904701 - 7904466
Alignment:
| Q |
1 |
tttaagcaattcagttttgttatgtatttgttattgcaagagagctgctctcatgcgcgaggcgcatgggttatgtgtttctaggggtttttgcttctgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7904701 |
tttaagcaattcagttttgttatgtatttgttattgcaagagagctgctctcatgcgcgaggcgcatgggttatgtgtttctaggggtttttgcttctgc |
7904602 |
T |
|
| Q |
101 |
catgtacgcgaggcacaccccgtgcgaggaccatgacttgtataatgacctactcgctcaaaagaaaggtagttgttattctcattgtctcatactcact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7904601 |
catgtacgcgaggcacaccccgtgcgaggaccatgacttgtataatgacctactcgctcaaaagaaaggtagttgttattctcattgtctcatactcgct |
7904502 |
T |
|
| Q |
201 |
tcaatctcccactaacttaagcggtatgagtggttgc |
237 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7904501 |
tcaatctcccactaacttaagc-gtatgagtggttgc |
7904466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University