View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1623_2D_high_20 (Length: 505)
Name: NF1623_2D_high_20
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_high_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 15 - 486
Target Start/End: Original strand, 3494121 - 3494593
Alignment:
| Q |
15 |
gacatcaagtgtacctttgtacacaatttctctgcctgtttatagtctttcaacttcagcttgcatgctgcatcgttcagattacaagcaattttcaagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3494121 |
gacatcaagtgtacctttgtacacaatttctctgcctgtttatagtctttcaacttcagcttgcatgctgcatcgttcagattacaagcaattttcaagg |
3494220 |
T |
|
| Q |
115 |
ctttggcacttttcttctgctcatcggtataggaagtatcatactctatgagcttcactgcctgcattaccgttcagtgtaagaaaaatgtctcaatgac |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3494221 |
ctttggcacttttcttctgctcatcggtataggaagtatcatactctatgaacttcactgcctgcattaccgttcagtgtaagaaaaatgtctcaatgac |
3494320 |
T |
|
| Q |
215 |
atggtttgaagatgagggtgaa-atatactaatgtatctacagttaccttctcatatcttttagaagcttttgcatatttcccagttttgaacaatgcat |
313 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3494321 |
atggtttgaagatgagggtgaatatatactaatgtatctacagttaccttctcatatcttttagaagcttttgcatatttcccagttttgaacaatgcat |
3494420 |
T |
|
| Q |
314 |
tcccttcttctttcttcttacctgcagcttctaccttctctccagttgtcatgtcccatgactccttatcctaaagcaagtaatggacaatgtatcagtg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3494421 |
tcccttcttctttcttcttacctgcagcttctaccttctctccagttgtcatgtcccatgactccttatcctaaagcaagtaatggacaatgtatcagtg |
3494520 |
T |
|
| Q |
414 |
catacacaaagctgacagttaggggaaaaaataaacataatcttattcgattcagtctaaagaatgtccagaa |
486 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
3494521 |
cacacacaaagctgacagttaggggaaaaaataaacataatcttattcaattcagtctaaagcatgtccagaa |
3494593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 2795930 - 2795864
Alignment:
| Q |
225 |
gatgagggtgaaatatactaatgtatctacagttaccttctcatatcttttagaagcttttgcatatt |
292 |
Q |
| |
|
||||| ||||||||||| ||||||| | | |||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
2795930 |
gatgatggtgaaatatattaatgtaac-atggttaccttctgatatcttttagaagctcttgcatatt |
2795864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 329
Target Start/End: Original strand, 34975171 - 34975242
Alignment:
| Q |
258 |
taccttctcatatcttttagaagcttttgcatatttcccagttttgaacaatgcattcccttcttctttctt |
329 |
Q |
| |
|
||||||||||||||| || || ||| || ||| ||| || | |||||||||||||||||||||||| ||||| |
|
|
| T |
34975171 |
taccttctcatatctctttgatgctctttcatgtttaccggctttgaacaatgcattcccttcttccttctt |
34975242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 39188276 - 39188342
Alignment:
| Q |
225 |
gatgagggtgaaatatactaatgtatctacagttaccttctcatatcttttagaagcttttgcatatt |
292 |
Q |
| |
|
||||||||||||||||| |||||| || |||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
39188276 |
gatgagggtgaaatatatcaatgtaacttg-gttaccttctcaaatcttttagaagctcttgcatatt |
39188342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 258 - 344
Target Start/End: Original strand, 18845358 - 18845444
Alignment:
| Q |
258 |
taccttctcatatcttttagaagcttttgcatatttcccagttttgaacaatgcattcccttcttctttcttcttacctgcagcttc |
344 |
Q |
| |
|
|||||| ||||||||||| |||||| || ||||||| || | ||| ||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
18845358 |
taccttgtcatatcttttggaagctctttcatatttaccggctttaaacaaaacattcccttcttctttcttcttaccagcagcttc |
18845444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 18845124 - 18845178
Alignment:
| Q |
25 |
gtacctttgtacacaatttctctgcctgtttatagtctttcaacttcagcttgca |
79 |
Q |
| |
|
||||||| ||||||||||||||||| | ||| || ||||||||||||| |||||| |
|
|
| T |
18845124 |
gtaccttagtacacaatttctctgcatctttgtactctttcaacttcaacttgca |
18845178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University