View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1623_2D_high_32 (Length: 379)
Name: NF1623_2D_high_32
Description: NF1623_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623_2D_high_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 37188246 - 37187911
Alignment:
| Q |
18 |
atgaaatatggggttatgttacgtatatatacacattgatgggttgtattttcttccaatttagttcttccttttcgtgtaaggattgatttatgtcaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37188246 |
atgaaatatggggttatgttacgtatatatacacattgatgggttgtattttcttccaatttagttcttccttttcgtgtaaggattgatttatgtcaag |
37188147 |
T |
|
| Q |
118 |
gaaaatctcaaattgggtttccctgtaacaaaatatgtctctaaagaataccttacttatttgctaggcattgtttagtcacgttctttctccacatgca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
37188146 |
gaaaatctcaaattgggtttccctgtaacaaaatatgtctctaaagaataccttacttatttgctaggcattgttgagtaacgttctttccccacatgca |
37188047 |
T |
|
| Q |
218 |
tgtaatattgattaagtttgtgcaaagttaaggatttaatttccaactgttctttggtgagggttttgtattattcttctcaatattatctttaaacaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37188046 |
tgtaatattgattaagtttgtgcaaagttgaggatttaatttccaactgttctttggtgagggttttgtattattcttctcaatattatctttaaacaat |
37187947 |
T |
|
| Q |
318 |
aacatattctccctgttaacaaagtttgcaagtcaa |
353 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37187946 |
aacatattctccccgttaacaaagtttgcaagtcaa |
37187911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 37893143 - 37892796
Alignment:
| Q |
18 |
atgaaatatggggttatgttacgtatatatacacattgatgggttgtattttcttccaatttagttcttccttttcgtgtaaggattgatttatgtcaag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37893143 |
atgaaatatggggttatgttacgtatatatacacattgatgggttatattttcttccaatttagttcttccttttcgtgtaaggattgatttatgtcaag |
37893044 |
T |
|
| Q |
118 |
gaaaatctcaaattgggtttccctgtaacaaaatatgtctctaaagaataccttacttatttgctaggcattgtttagtcacgttctttctccacatgca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37893043 |
gaaaatctcaaattgggtttccctgtaacaaaatatgtctctaaagaataccttacttatttgctaggcattgtttagtcacgttctttctccacatgca |
37892944 |
T |
|
| Q |
218 |
tgtaatattgattaagtttgtgcaaagttaaggatttaatttcc-------aactgttctttggtgagggttttgtattattcttctcaatattatcttt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37892943 |
tgtaatattgattaagtttgtgcaaagttaaggatttaatttccaacttccaactgttctttggtgagggttttgtattattcttctcaatattatcttt |
37892844 |
T |
|
| Q |
311 |
aaacaataac-atattctccctgttaacaaagtttgcaagtcaacctt |
357 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37892843 |
aaacaataacaatattctccctgttaacaaagtttgcaagtcaacctt |
37892796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University